View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1286-Insertion-5 (Length: 394)
Name: NF1286-Insertion-5
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 29103964 - 29103577
Alignment:
| Q |
7 |
aaatcttccacctccaagggaggcaaagaaaacctatgttgcatccttgcacactctagtgctatatccacctgaaaataattaagacaattttttaaaa |
106 |
Q |
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| T |
29103964 |
aaatcttccacctccaagggaggcaaagaaaacctatgttgcatccttgcacactctagtgctatatccacctgaaaataattaagacaattttttaaaa |
29103865 |
T |
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| Q |
107 |
acttataaaattaaagtgannnnnnnncaccnnnnnnnctgtatttgattaagttttggtgtaaaagaaattaactagtagtaccttggatggagggtaa |
206 |
Q |
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| T |
29103864 |
actcataaaattaaagtgattttttttcaccaaaaaaactgtatttaattaagttttggtgcaagagaaattaactagtagtaccttggatggagggtaa |
29103765 |
T |
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| Q |
207 |
ttaggtgtggatccataattgggaaatgatgaagatattggaagactgagtaagtcttctgataagaattgtgtccaaattccatcatcccttgtgatat |
306 |
Q |
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| T |
29103764 |
ttaggtgtggatccataattgggaaatgatgaagatattggaagactgagcaagtcttctgataagaactgtgtccaaatcccatcatcccttgtgatat |
29103665 |
T |
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| Q |
307 |
tcccaccattgttatttagagtattagtcccattgttttgggatgtgcttggatcccatggcatcaaataatttgaggtccctataac |
394 |
Q |
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| T |
29103664 |
tcccaccattgttatttagagtattagtcccattgttttgggatgtgcttggatcccatggcatcaaataatttgaggtccctataac |
29103577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 32788273 - 32788340
Alignment:
| Q |
13 |
tccacctccaagggaggcaaagaaaacctatgttgcatccttgcacactctagtgctatatccacctg |
80 |
Q |
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| T |
32788273 |
tccacctccaatggaggcatagcaaacctatgttgcatccttgcacactctagtgcaatatccacctg |
32788340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 36149583 - 36149534
Alignment:
| Q |
28 |
ggcaaagaaaacctatgttgcatccttgcacactctagtgctatatccac |
77 |
Q |
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| T |
36149583 |
ggcatagaaaacctatgatgcatccttgcacactctagtgcaatatccac |
36149534 |
T |
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