View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1286-Insertion-6 (Length: 433)
Name: NF1286-Insertion-6
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286-Insertion-6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 16892193 - 16891962
Alignment:
| Q |
8 |
actatctctaagctaccaattacaagagcgaaaatcaattataaattgctctaactgatagtgtttaactgtctaagctctaactaattgtgtataaccg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16892193 |
actatctctaagctaccaattacaagagtgaaaatcaaatataaattgctctaactgatagtgtttaactgtctaagctctaactaattgtgtataaccg |
16892094 |
T |
|
| Q |
108 |
tctaactaactgcttgttgacagttttgtgaggtaacttgatctgcaagttaactaatcagtgtgcattctttgtattgttttttgtatctaattcttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16892093 |
tctaactaactgcttgttgacagttttgggaggtaacttgatctgcaagttaactaatcagtgtgcattctttgtattgttttttgtatctaattcttca |
16891994 |
T |
|
| Q |
208 |
ttcttgaataaaagttacttgacacagataaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16891993 |
ttcttgaataaaagttacttgacacagataaa |
16891962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 16891874 - 16891665
Alignment:
| Q |
235 |
ataaacacattccatcaaatgtaattcttttgactcttccaaaacttgatcattttggacttaaaccaattaacttcaaactaat-------------ct |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16891874 |
ataaacacattccatcaaatgtaattcttttgactcttccaaaacttgatcattttggacttaaaccaattaacttcaaactaatggaacaaactaatct |
16891775 |
T |
|
| Q |
322 |
aacaaacatgttactaacttttactatctcttgtagtccccctcaaatttgcatggaccctttatagtacatgataacatgattgagttcgcacatctca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
16891774 |
aacaaacatgttactaacttttactatctcttgtagtccccctcaaatttgcatggaccctttatagtacatgataacatgattgagttcacaca--tca |
16891677 |
T |
|
| Q |
422 |
catgctggttag |
433 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16891676 |
catgctggttag |
16891665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University