View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_high_15 (Length: 244)
Name: NF12860_high_15
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3956699 - 3956924
Alignment:
| Q |
1 |
tcacctgcaagataattgctgcgcaaattgagatatgcgagctttgagagaagaccaatttcttttgggatactccctcgtagaccaattccaatgacat |
100 |
Q |
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| T |
3956699 |
tcacctacaagagaattgctacgcagatcgagatatgcaagctttgcgagaagaccaatttcttttgggatacgccctcgtagaccaattccaatgacat |
3956798 |
T |
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| Q |
101 |
caagtttttctaaattatgaaaaacagacaaattgagtttttcaaattgaataacccatgtccttgttgcaaaatatagattgatttcttttatgcttcc |
200 |
Q |
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| T |
3956799 |
caagtttttctaaattatgaaaaacagacatgttgagtttttcaaattgaataacccatgtccttgttgcaaaatatatattgatttcttttatacttcc |
3956898 |
T |
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| Q |
201 |
aacctcattgcaagatatgctagacc |
226 |
Q |
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| T |
3956899 |
agcctcattgcaagatatactagacc |
3956924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 3852160 - 3851983
Alignment:
| Q |
1 |
tcacctgcaagataattgctgcgcaaattgagatatgcgagctttgagagaagaccaatttcttttgggatactccctcgtagaccaattccaatgacat |
100 |
Q |
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|||||| ||||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852160 |
tcacctacaagagaattgctattcaaatcgacatatgcgagctttgagagaagaccaatttcttttgggatactccctcgtagaccaattccaatgacag |
3852061 |
T |
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| Q |
101 |
caagtttttctaaattatgaaaaacagacaaattgagtttttcaaattgaataacccatgtccttgttgcaaaatata |
178 |
Q |
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| T |
3852060 |
caagtctttctaaattgtggaaaagagacaggttgagttttccaaattgaatcacccatgtccttgttgcaaaatata |
3851983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 3851842 - 3851783
Alignment:
| Q |
167 |
ttgcaaaatatagattgatttcttttatgcttccaacctcattgcaagatatgctagacc |
226 |
Q |
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| T |
3851842 |
ttgcaaaatatatattgatttcttttatgcttccagcctcattgcaagatatactagacc |
3851783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 2328191 - 2328152
Alignment:
| Q |
39 |
gagctttgagagaagaccaatttcttttgggatactccct |
78 |
Q |
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| T |
2328191 |
gagcttggagagaagaccaatttcttttgggatagtccct |
2328152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 2319969 - 2319856
Alignment:
| Q |
39 |
gagctttgagagaagaccaatttcttttgggatactccctcgtagaccaattccaatgacatcaagtttttctaaattatgaaaaacagacaaattgagt |
138 |
Q |
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|||||| | ||||||||||||||||| ||||||| | ||| |||| ||||| ||| |||| ||| |||||||||| || ||||||||||| || || |
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| T |
2319969 |
gagcttggtgagaagaccaatttcttctgggatagttccttgtagtccaatgccatagacaaaaaggatttctaaattgtggaaaacagacaagttaagc |
2319870 |
T |
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| Q |
139 |
ttttcaaattgaat |
152 |
Q |
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||||||| ||||| |
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| T |
2319869 |
gtttcaaagtgaat |
2319856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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