View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_high_16 (Length: 243)
Name: NF12860_high_16
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 34848766 - 34848872
Alignment:
| Q |
9 |
agcagagaacacttggcaaaacataccatcagataaaaagtggacaggatggaaattacaagaaaaatattttgtggacactcatgtacaaaataacatt |
108 |
Q |
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| T |
34848766 |
agcagagaacacttggcaaaacataccatcggataaaaagtggacaggatggcaattacaagaaaaatattttgtggacactcatgtactaaataacatt |
34848865 |
T |
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| Q |
109 |
ttgacta |
115 |
Q |
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| T |
34848866 |
ttgacta |
34848872 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 34848941 - 34848982
Alignment:
| Q |
184 |
caaataaagtgttgcataggtgtaagaaaattagaggtgtat |
225 |
Q |
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| T |
34848941 |
caaataaagtgttggataggtgtaaggaaattagaggtgtat |
34848982 |
T |
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