View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12860_high_2 (Length: 594)
Name: NF12860_high_2
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 310 - 586
Target Start/End: Complemental strand, 47287005 - 47286729
Alignment:
| Q |
310 |
ccctctagcaatcaaggagaatgggaactaatacaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcataattttcg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287005 |
ccctctagcaatcaaggagaatgggaactaatacaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcataattttcg |
47286906 |
T |
|
| Q |
410 |
atcgaaccgattttggcccttcaaatctccctctttcaaatggccggtgtcgtatggatccattcgacactgcccttaaaattgattgcactgctcactc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286905 |
atcgaaccgattttggcccttcaaatctccctctttcaaatggccggtgtcgtatggatccattcgacactgcccttaaaattgattgcactgctcactc |
47286806 |
T |
|
| Q |
510 |
tgttctatacgacattgccacaaatacattccgatccttaactgtacaaacagacacttggtgttccacaggttctg |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47286805 |
tgttctatacgacattgccacaaatacattccgatccttaactgtacaaacagacacttggtgttcctcaggttctg |
47286729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 47287300 - 47287093
Alignment:
| Q |
18 |
atatatctcatgtagtattttatcattcaaatcaatatatatttcattaatttcgtacactaaacaaacccaaatcccaccaacactttactagtaaaat |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287300 |
atatatctcatgtagtatttaatcattcaaatcaatatatatttcattaatttcgtacactaaacaaacccaaatcccaccaacactttactagtaaaat |
47287201 |
T |
|
| Q |
118 |
attaatctaactactagctactcaattccaacactctacctccttttctcttctaacccacccaaaatgagctctatcacattaatcttaattttcttca |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47287200 |
attaatccaactactagctactcaattccaacactctacctccttttctcttctaacccacccaaaatgagctctatcacattaatcctaattttcttca |
47287101 |
T |
|
| Q |
218 |
tactatct |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
47287100 |
tactatct |
47287093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University