View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12860_high_9 (Length: 332)
Name: NF12860_high_9
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 15966826 - 15966619
Alignment:
| Q |
18 |
ggaacggccgctgccgtacctccgtatctttatcacgttgcagttaaaaggtaactacttgaaatgcatttgtgtaatgtaatatgagcatttctcatgc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15966826 |
ggaacggccgctgccgtacctccgaatctttatcacgttgcagttaaaaggtaactacttgaaatgcatttgtgtaatgtaatatgagcatttctcatgc |
15966727 |
T |
|
| Q |
118 |
gagga-----taatttactcaaactttaataatggcattggttcaagttttcaaatgtataagtaatcataactcaaaggaaaagatttaaatctcattg |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15966726 |
gaggatagtgtaatttactcaaactttaataatggcattggttcaagttttcaaatgtataagtaatcataactcaaaggaaaagatttaaatctcatta |
15966627 |
T |
|
| Q |
213 |
tcaaagat |
220 |
Q |
| |
|
||||||| |
|
|
| T |
15966626 |
gcaaagat |
15966619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 15966602 - 15966554
Alignment:
| Q |
210 |
ttgtcaaagatttgagggacatggaatgatctcttcttgtgacgtacac |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15966602 |
ttgtcaaagatttgagggacatggaatgatctcttcttgtgacgtacac |
15966554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 15519022 - 15518836
Alignment:
| Q |
43 |
atctttatcacgttgcagttaaaaggtaac-tacttgaaatgcatttgtgtaatgtaatatgagca-tttctcatgcgaggata-----atttactcaaa |
135 |
Q |
| |
|
|||||||||| |||||| || |||||||| ||||||||||||||||||||| |||||||||| | ||||||||| |||| | ||||||| ||| |
|
|
| T |
15519022 |
atctttatcatgttgca-ttgaaaggtaatgtacttgaaatgcatttgtgtagtgtaatatgaataatttctcatggaaggagagtgaaatttactaaaa |
15518924 |
T |
|
| Q |
136 |
ctttaataatggcattggttcaagttttcaaatgtataagtaatcataactcaaaggaaaagatttaaatctcattgtcaaagatttg |
223 |
Q |
| |
|
||||| ||||| |||||||| |||||| ||||||| |||| ||||| ||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
15518923 |
ctttagtaatgacattggttaaagtttccaaatgtttaaggaatcactgttcaaaagaaaagatttaaatttcatttgcaaagatttg |
15518836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 11998835 - 11999000
Alignment:
| Q |
20 |
aacggccgctgccgtacctccgtatctttatcacgttgcagttaaaaggtaactacttgaaatgcatttgtgtaatgtaatatgagcatttctcatgcga |
119 |
Q |
| |
|
||||||| |||| | |||||| |||||||||| |||||| | |||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
11998835 |
aacggccactgctgcacctcccaatctttatcatgttgcaatgaaaaggtaactacttgaaatac--tagtgtaatgtaatatgagcatttctcatgcga |
11998932 |
T |
|
| Q |
120 |
gga-----taatttactcaaactttaataatggcattggttcaagttttcaaatgtataagtaatcat |
182 |
Q |
| |
|
||| |||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
11998933 |
ggagagtgtaatttactcaatctttaatgatggcattggtttaagtttccaaatgtataagtaatcat |
11999000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University