View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_11 (Length: 316)
Name: NF12860_low_11
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 29581075 - 29581215
Alignment:
| Q |
20 |
ctaagaagtgccaaggtgtgccattttggggcattgtgagcaataaaattaaataggaggccagacattatgttttggagtattcatccatgaccaactc |
119 |
Q |
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| T |
29581075 |
ctaagaagtgccaaggtgtgccattttggggcattgtgagcaataaaattaaataggaggccagacattatgttttggagtattcatccatgaccaactc |
29581174 |
T |
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| Q |
120 |
caatataacaaatacatgtgtaggtgcataaagatgcataa |
160 |
Q |
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| T |
29581175 |
caatataacaaatacatgtgtaggtgcataaaggtgcataa |
29581215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 29581309 - 29581365
Alignment:
| Q |
244 |
ctaaagttttgacacgttaaatattttaaatcagttgccaagtaatagacatgatgt |
300 |
Q |
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| T |
29581309 |
ctaaatttttgacacgttaaatattttaaatcagttgccaagtaatagacatgatgt |
29581365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 29581206 - 29581241
Alignment:
| Q |
141 |
aggtgcataaagatgcataatcactaaggtcatgac |
176 |
Q |
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| T |
29581206 |
aggtgcataaagatgcataatcactaaggtcatgac |
29581241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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