View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_12 (Length: 299)
Name: NF12860_low_12
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 30541592 - 30541881
Alignment:
| Q |
1 |
aacttccttatgtggtgcagaaggtgatttcatctgttggctaccttcaattgctacatcagtttgtcttaatgtttttgtatcctctagtagctaatta |
100 |
Q |
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| T |
30541592 |
aacttccttatgtggtgcagaaggtgatttcatctgttggttaccatcaattgctacatcagtttgtcttaatgtttttgtatcctttagtagctaaata |
30541691 |
T |
|
| Q |
101 |
aagatgatattttcatcatttcattgcagttctgtcttcagagagatgaaactgcatcaaaaggatttctccagttggtgtggtgaatgcaaccgcatga |
200 |
Q |
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| T |
30541692 |
aagatgaaattttcatcatttcattgcagttctgtcttcagagagatgaaactgcatcaaaaggatttttccagttggtgtggtgaatgcaaccgcatga |
30541791 |
T |
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| Q |
201 |
aaatggaaagacaacgctccacatgtgctgctaccagattggtaagtctttttctagtctgaaatcctcatccatctacattttctctgc |
290 |
Q |
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| T |
30541792 |
aaatggaaagacaacgctccacatgtgctgctaccagattggtaagtctttttctagtctgaaatcctcatccatctacattttcactgc |
30541881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 30568896 - 30568955
Alignment:
| Q |
98 |
ttaaagatgatattttcatcatttcattgcagttctgtcttcagagagatgaaactgcat |
157 |
Q |
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| T |
30568896 |
ttaaagatgaaatttgcattaatttattgcagatctgtctttagagagatgaaactgcat |
30568955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 30572418 - 30572468
Alignment:
| Q |
103 |
gatgatattttcatcatttcattgcagttctgtcttcagagagatgaaact |
153 |
Q |
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| T |
30572418 |
gatgaaatttgcattatttcattgcagatctgtctttagagagatgaaact |
30572468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 31294434 - 31294520
Alignment:
| Q |
45 |
cttcaattgctacatcagtttgtcttaatgtttttgtatcctctagtagctaattaaagatgatattttcatcatttcattgcagtt |
131 |
Q |
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| T |
31294434 |
cttcaattgctacatgagtttgtctcaatatttttgtatcctttagtagctacttaaagatgaaattttcattatttcattgcagtt |
31294520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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