View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12860_low_13 (Length: 293)

Name: NF12860_low_13
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12860_low_13
NF12860_low_13
[»] chr3 (17 HSPs)
chr3 (113-277)||(19745612-19745776)
chr3 (17-102)||(1194099-1194184)
chr3 (39-103)||(11503679-11503743)
chr3 (39-103)||(48222326-48222390)
chr3 (39-103)||(48223004-48223068)
chr3 (39-106)||(6588544-6588610)
chr3 (39-102)||(53302951-53303014)
chr3 (39-103)||(47861778-47861841)
chr3 (39-103)||(47862462-47862526)
chr3 (39-103)||(11504363-11504427)
chr3 (43-103)||(30733612-30733672)
chr3 (39-83)||(53303635-53303679)
chr3 (42-106)||(6589314-6589377)
chr3 (39-71)||(11195829-11195861)
chr3 (42-96)||(16073645-16073698)
chr3 (48-90)||(52497545-52497587)
chr3 (51-83)||(25749094-25749126)
[»] chr8 (15 HSPs)
chr8 (17-108)||(39774294-39774385)
chr8 (17-106)||(39773564-39773653)
chr8 (17-106)||(5157952-5158041)
chr8 (39-106)||(5157230-5157297)
chr8 (39-103)||(28824126-28824190)
chr8 (39-103)||(29555509-29555573)
chr8 (39-103)||(38376208-38376272)
chr8 (39-103)||(44445969-44446033)
chr8 (39-110)||(5156546-5156617)
chr8 (39-103)||(28824803-28824866)
chr8 (39-103)||(29556193-29556257)
chr8 (39-103)||(44446645-44446709)
chr8 (49-106)||(14857947-14858004)
chr8 (39-103)||(38376893-38376955)
chr8 (66-98)||(7256212-7256244)
[»] chr5 (16 HSPs)
chr5 (118-250)||(25649333-25649461)
chr5 (17-107)||(3341583-3341673)
chr5 (17-107)||(3358492-3358582)
chr5 (17-107)||(3342314-3342404)
chr5 (17-106)||(3359223-3359312)
chr5 (39-103)||(4276250-4276314)
chr5 (39-103)||(31230116-31230180)
chr5 (39-109)||(31229425-31229495)
chr5 (39-103)||(2600834-2600897)
chr5 (39-103)||(4275566-4275630)
chr5 (39-103)||(2601518-2601581)
chr5 (43-98)||(5233770-5233825)
chr5 (17-106)||(11377283-11377371)
chr5 (39-106)||(11376940-11377008)
chr5 (39-106)||(11378106-11378174)
chr5 (39-106)||(11378929-11378997)
[»] chr1 (18 HSPs)
chr1 (17-108)||(9088418-9088509)
chr1 (17-109)||(9087685-9087777)
chr1 (17-108)||(45881484-45881575)
chr1 (17-106)||(45880754-45880843)
chr1 (17-106)||(35813292-35813380)
chr1 (17-108)||(32517539-32517630)
chr1 (26-106)||(35814016-35814096)
chr1 (19-106)||(32516809-32516896)
chr1 (39-103)||(36180409-36180473)
chr1 (39-103)||(47708508-47708572)
chr1 (39-109)||(249678-249748)
chr1 (39-103)||(250362-250425)
chr1 (39-103)||(11625972-11626036)
chr1 (39-103)||(11625288-11625351)
chr1 (39-103)||(36179718-36179781)
chr1 (43-104)||(51590766-51590827)
chr1 (43-98)||(42308899-42308954)
chr1 (44-101)||(27039099-27039155)
[»] chr2 (13 HSPs)
chr2 (17-106)||(21647599-21647688)
chr2 (17-106)||(21648329-21648418)
chr2 (17-106)||(37644404-37644493)
chr2 (17-106)||(29982150-29982239)
chr2 (17-108)||(15321809-15321901)
chr2 (39-106)||(29982902-29982969)
chr2 (41-106)||(37645158-37645223)
chr2 (39-103)||(1389085-1389149)
chr2 (39-103)||(22424720-22424784)
chr2 (39-103)||(22424035-22424099)
chr2 (49-106)||(15167822-15167879)
chr2 (17-74)||(15322620-15322677)
chr2 (39-96)||(25217090-25217147)
[»] chr7 (14 HSPs)
chr7 (17-108)||(7331108-7331199)
chr7 (17-106)||(7331840-7331929)
chr7 (17-108)||(31724152-31724243)
chr7 (39-103)||(33255722-33255786)
chr7 (39-103)||(47942689-47942753)
chr7 (39-103)||(47948119-47948183)
chr7 (39-103)||(47942013-47942076)
chr7 (49-107)||(34151595-34151653)
chr7 (49-107)||(34175471-34175529)
chr7 (39-103)||(33256407-33256470)
chr7 (39-106)||(48843176-48843244)
chr7 (46-103)||(22377356-22377413)
chr7 (39-106)||(16959596-16959661)
chr7 (39-106)||(16941089-16941154)
[»] chr4 (20 HSPs)
chr4 (17-106)||(2520284-2520373)
chr4 (17-106)||(29380451-29380540)
chr4 (17-105)||(29379722-29379810)
chr4 (39-103)||(4206208-4206272)
chr4 (39-103)||(4206886-4206950)
chr4 (39-103)||(51539823-51539887)
chr4 (39-103)||(51540508-51540572)
chr4 (39-103)||(39232105-39232169)
chr4 (39-103)||(49603419-49603483)
chr4 (39-103)||(49604095-49604159)
chr4 (39-103)||(39232789-39232852)
chr4 (39-106)||(2519556-2519622)
chr4 (39-101)||(46513674-46513736)
chr4 (41-103)||(25699288-25699353)
chr4 (17-106)||(42020973-42021064)
chr4 (42-107)||(2528674-2528738)
chr4 (38-103)||(26355227-26355291)
chr4 (46-107)||(14090718-14090778)
chr4 (39-81)||(42020403-42020445)
chr4 (51-103)||(441307-441358)
[»] scaffold0181 (2 HSPs)
scaffold0181 (17-107)||(18038-18128)
scaffold0181 (17-106)||(17308-17397)
[»] chr6 (14 HSPs)
chr6 (17-106)||(26275427-26275516)
chr6 (39-103)||(304975-305039)
chr6 (39-103)||(305646-305710)
chr6 (39-103)||(644102-644166)
chr6 (39-103)||(33775570-33775634)
chr6 (39-102)||(19803381-19803444)
chr6 (39-102)||(33776247-33776310)
chr6 (39-108)||(644779-644848)
chr6 (39-105)||(23950050-23950116)
chr6 (39-103)||(22509757-22509819)
chr6 (39-89)||(26276178-26276228)
chr6 (39-89)||(23949144-23949193)
chr6 (51-108)||(8208108-8208164)
chr6 (39-107)||(19693811-19693878)
[»] scaffold0178 (2 HSPs)
scaffold0178 (39-104)||(5145-5210)
scaffold0178 (39-96)||(4758-4815)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 113 - 277
Target Start/End: Original strand, 19745612 - 19745776
Alignment:
Q  113 ctctacctccacacttcattcatccagaaaccctaaaaccacgttcttcattctctccctccctcccatgagcgccgctgccatcctctgcaccacatgc 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19745612 ctctacctccacatttcattcatccagaaaccctaaaaccacgttcttcattctctccctccctcccatgagcgccgctgccatcctctgcaccacatgc 19745711  T
Q  213 accgtcgagctcagcctcctttggcctaaataacctcannnnnnnncatcttctcaactctctat 277  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  19745712 accgtcgagctcagcctcctttggcctaaataacctcattttttttcatcttctcaactctctat 19745776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 1194184 - 1194099
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 102  Q
    ||||| || |||||||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1194184 ggtatgtaactaccgggtgtattataaaggttatttttgtatttttggggggcctaaagagatattgagggggcctaaaaagcaat 1194099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 11503743 - 11503679
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11503743 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 11503679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 48222390 - 48222326
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48222390 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 48222326  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 48223004 - 48223068
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48223004 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 48223068  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 6588610 - 6588544
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6588610 tataaaggttatttttgtatttttagggggcctaaagagatattgaggggg-ctaaaaagcaatcctc 6588544  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 53303014 - 53302951
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53303014 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 53302951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 47861841 - 47861778
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47861841 tataaaggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 47861778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 47862462 - 47862526
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  47862462 tataaaggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 47862526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 11504363 - 11504427
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||    
T  11504363 tataaaggttatttttgtatttttaaggggcctaaaaagatattgggggagcctaaaaagcaatc 11504427  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 30733672 - 30733612
Alignment:
Q  43 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  30733672 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 30733612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 53303635 - 53303679
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattg 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  53303635 tataaaggttatttttgtatttttagggggcctaaagagatattg 53303679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 6589314 - 6589377
Alignment:
Q  42 aaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||| ||||||| | ||||||||||||||||| |||||||||||||| |||||||||    
T  6589314 aaaggttattttcgtatttt-acggggcctaaagagatatcgagggggcctaaaaggcaatcctc 6589377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 11195829 - 11195861
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcct 71  Q
    |||||||||||||||||||||||||||||||||    
T  11195829 tataaaggttatttttgtatttttagggggcct 11195861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 16073698 - 16073645
Alignment:
Q  42 aaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaa 96  Q
    |||||||| |||||||||||| ||||||| |||||||||||  ||||||||||||    
T  16073698 aaaggttaattttgtatttttggggggcccaaagagatatt-tgggggcctaaaa 16073645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 52497587 - 52497545
Alignment:
Q  48 tatttttgtatttttagggggcctaaagagatattgagggggc 90  Q
    ||||||||||  |||||||||||||||||||||| ||||||||    
T  52497587 tatttttgtaactttagggggcctaaagagatatggagggggc 52497545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 25749094 - 25749126
Alignment:
Q  51 ttttgtatttttagggggcctaaagagatattg 83  Q
    |||||||||||||||||||||||| ||||||||    
T  25749094 ttttgtatttttagggggcctaaaaagatattg 25749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 39774294 - 39774385
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39774294 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 39774385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 39773653 - 39773564
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39773653 ggtatttatctaccggaagtcttataaaggttatttttgaatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 39773564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 5157952 - 5158041
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5157952 ggtatttatctaccggatgtcttataaaggttatttttgtatttttaggaggcctaaagagatattgagggggcctaaaaagcaatcctc 5158041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 5157230 - 5157297
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5157230 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcctc 5157297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 28824190 - 28824126
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28824190 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 28824126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 29555573 - 29555509
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29555573 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 29555509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 38376272 - 38376208
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38376272 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 38376208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 44446033 - 44445969
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44446033 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 44445969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 5156617 - 5156546
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctctatc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  5156617 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagaaatcttctatc 5156546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 28824803 - 28824866
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28824803 tataaaggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 28824866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 29556193 - 29556257
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  29556193 tataaaggttatttttgtatttttagggggcctaaagagatattggggggacctaaaaagcaatc 29556257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 44446645 - 44446709
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  44446645 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatc 44446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 14857947 - 14858004
Alignment:
Q  49 atttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14857947 atttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 14858004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 38376893 - 38376955
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  38376893 tataaagattatttttgtatttt-agggggcctaaagagatattg-gggggcctaaaaagcaatc 38376955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 7256212 - 7256244
Alignment:
Q  66 gggcctaaagagatattgagggggcctaaaaag 98  Q
    |||||||||||||||| ||||||||||||||||    
T  7256212 gggcctaaagagatatggagggggcctaaaaag 7256244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 25649461 - 25649333
Alignment:
Q  118 cctccacacttcattcatccagaaaccctaaaaccacgttcttcattctctccctccctcccatgagcgccgctgccatcctctgcaccacatgcaccgt 217  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||||||||    
T  25649461 cctccccatttcattcatccagaaaccctaaaaccacgttcttcattctctccctccc----atgagcgcagcttccatcctctgcaccacatgcaccgt 25649366  T
Q  218 cgagctcagcctcctttggcctaaataacctca 250  Q
    ||||||||||||||||| || |||| |||||||    
T  25649365 cgagctcagcctcctttagcttaaagaacctca 25649333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3341673 - 3341583
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3341673 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 3341583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3358582 - 3358492
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3358582 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 3358492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 3342314 - 3342404
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3342314 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatcctct 3342404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 3359223 - 3359312
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3359223 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatcctc 3359312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 4276250 - 4276314
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4276250 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 4276314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 31230116 - 31230180
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31230116 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 31230180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 31229495 - 31229425
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctctat 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  31229495 tataaaggttatttttgtacttttagggggcctaaagagatattgggggggcctaaaaagcaatcttctat 31229425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 2600897 - 2600834
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2600897 tataaaggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 2600834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 4275630 - 4275566
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4275630 tataaaggttatttttgtatttttagggggcctaaagagatattaggggggcctaaaaagcaatc 4275566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 2601518 - 2601581
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  2601518 tataaaggttatttttgtatttttaggaggcctaaagagatattg-gggggcctaaaaagcaatc 2601581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 5233825 - 5233770
Alignment:
Q  43 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaag 98  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||||||||||    
T  5233825 aaggttatttttgtatttttagagggcctaaaaagatattggaggggcctaaaaag 5233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 11377371 - 11377283
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttattttt-gtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||  ||||||  ||| |||||| ||||||||| |||||||||||||| | |||||||||||  ||||||||||||||||||||||    
T  11377371 ggtatttaagtaccggatgtcttataaaagttattttttgtatttttagggggaccaaagagatatt--gggggcctaaaaagcaatcctc 11377283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11377008 - 11376940
Alignment:
Q  39 tataaaggttattttt-gtatttttagggggc-ctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| ||||||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  11377008 tataaaggttattttttgtatttttaggggggaccaaagagatattg-gggggcctaaaaagcaatcctc 11376940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11378174 - 11378106
Alignment:
Q  39 tataaaggttattttt-gtattttt-agggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||||||| |||||| | |||||||||||| |||||| ||||| |||||||||    
T  11378174 tataaaggttatttttcgtatttttaagggggaccaaagagatattg-gggggcttaaaatgcaatcctc 11378106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11378997 - 11378929
Alignment:
Q  39 tataaaggttattttt-gtattttta-gggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| ||||||||| ||||| | |||||||||||| |||||| ||||| |||||||||    
T  11378997 tataaaggttatttttcgtatttttagggggggccaaagagatattg-gggggcttaaaatgcaatcctc 11378929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 9088418 - 9088509
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9088418 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 9088509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 9087777 - 9087685
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctctat 109  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9087777 ggtatttatctaccggaagtcgtaaaaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctctat 9087685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 45881484 - 45881575
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45881484 ggtatttatctactggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 45881575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 45880843 - 45880754
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45880843 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 45880754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 35813380 - 35813292
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35813380 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattga-ggggcctaaaaagcaatcctc 35813292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 32517539 - 32517630
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  32517539 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgaggggttctaaaaagcaatcctcta 32517630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 35814016 - 35814096
Alignment:
Q  26 ctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35814016 ctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 35814096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 32516896 - 32516809
Alignment:
Q  19 tatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32516896 tatttatctactggaagtcgtataaaggttatttttgtatttttaggggacttaaagagatattgagggggcctaaaaagcaatcctc 32516809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 36180409 - 36180473
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36180409 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 36180473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 47708508 - 47708572
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47708508 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 47708572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 249748 - 249678
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctctat 109  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  249748 tataaaggttatttttgtatttttagggggtctaaagagatattgggggggcctaaaaagcaatcttctat 249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 250362 - 250425
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  250362 tataaaggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 250425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 11625972 - 11626036
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11625972 tataaagattatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 11626036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 11625351 - 11625288
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11625351 tataaatgttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 11625288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 36179781 - 36179718
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  36179781 tataaaggttatttttgtatttttaggaggcctaaagagatattg-ggggacctaaaaagcaatc 36179718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 51590766 - 51590827
Alignment:
Q  43 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcc 104  Q
    |||| |||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||    
T  51590766 aagggtatttttgtagttttagggtgcctaaagagatattgtgggggtctaaaaagcaatcc 51590827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 42308899 - 42308954
Alignment:
Q  43 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaag 98  Q
    ||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||    
T  42308899 aaggttatttttgtatttttaggaggcctaaaaagatattggaggggcctaaaaag 42308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 27039099 - 27039155
Alignment:
Q  44 aggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaa 101  Q
    |||||| ||| ||||||||||||||| |||| |||||||| ||||||||||| |||||    
T  27039099 aggttaatttcgtatttttagggggcttaaaaagatattg-gggggcctaaagagcaa 27039155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 21647688 - 21647599
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647688 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 21647599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 21648329 - 21648418
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21648329 ggtatttatctaccggaagtcgtataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatcctc 21648418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 37644493 - 37644404
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37644493 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 37644404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 29982239 - 29982150
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29982239 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgagagggcctaaaaagcaatcctc 29982150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 15321901 - 15321809
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgt-atttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15321901 ggtatttatctaccggaagtcgtataaaggttatttttgttatttttagggggcctaaagagatattgagggggcttaaaaagcaatcctcta 15321809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 29982902 - 29982969
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29982902 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcctc 29982969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 37645158 - 37645223
Alignment:
Q  41 taaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37645158 taaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcctc 37645223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 1389085 - 1389149
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1389085 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 1389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 22424720 - 22424784
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22424720 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 22424784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 22424099 - 22424035
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  22424099 tataaaggttatttttgtatttttaaggggcctaaagagatattgggggagcctaaaaagcaatc 22424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 15167822 - 15167879
Alignment:
Q  49 atttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15167822 atttttgtatctttagggggcctaaagagatattgagggggtctaaaaagcaatcctc 15167879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 15322620 - 15322677
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaa 74  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  15322620 ggtatttatctaccggaagtcttataaaggtcatttttgtatttttagggggcctaaa 15322677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 25217090 - 25217147
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaa 96  Q
    |||||||| ||||||  |||||||| |||| |||||||||||||  ||||||||||||    
T  25217090 tataaaggatattttcatatttttaaggggtctaaagagatatttggggggcctaaaa 25217147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 7331199 - 7331108
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7331199 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 7331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 7331840 - 7331929
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7331840 ggtatttatctactggaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 7331929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 31724152 - 31724243
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  31724152 ggtatttatctaccggaagtcttataaagattatttttgtatttttaaggggcctaaatagatattgagggggcctaaaaagcaatcctcta 31724243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 33255786 - 33255722
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33255786 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 33255722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 47942689 - 47942753
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47942689 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 47942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 47948119 - 47948183
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47948119 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 47948183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 47942076 - 47942013
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47942076 tataaaggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 47942013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 34151653 - 34151595
Alignment:
Q  49 atttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34151653 atttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 34151595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 34175471 - 34175529
Alignment:
Q  49 atttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34175471 atttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 34175529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 33256407 - 33256470
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  33256407 tataaaggttatttttgtacttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 33256470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 48843244 - 48843176
Alignment:
Q  39 tataaaggttattttt-gtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  48843244 tataaaggttatttttcgtatttttagggggcctaaagagatattgagggtggctataaagcaatcctc 48843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 22377356 - 22377413
Alignment:
Q  46 gttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  22377356 gttaattttgtatttttagggggcctaaagagatactggaggggcctaaaaagcaatc 22377413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 16959596 - 16959661
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||| ||||||||  ||||||||||| |||||||||||||||  |||||| |||||||||||||||    
T  16959596 tataaaagttattttcatatttttagggagcctaaagagatatt--gggggcgtaaaaagcaatcctc 16959661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 16941089 - 16941154
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||| ||||||||  ||||||||||| ||||||||||||| |  |||||| |||||||||||||||    
T  16941089 tataaaagttattttcatatttttagggagcctaaagagatact--gggggcgtaaaaagcaatcctc 16941154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 2520284 - 2520373
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2520284 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 2520373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 29380451 - 29380540
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29380451 ggtatttatctaccggaagtcttataaaggttatttttgtatttttaggggacctaaagagatattgagggggcctaaaaagcaatcctc 29380540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 29379810 - 29379722
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcct 105  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29379810 ggtatttatctaccagaagttgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcct 29379722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 4206272 - 4206208
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4206272 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 4206208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 4206886 - 4206950
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4206886 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 4206950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 51539887 - 51539823
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51539887 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 51539823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 51540508 - 51540572
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51540508 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 51540572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 39232169 - 39232105
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39232169 tataaaggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 39232105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 49603483 - 49603419
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  49603483 tataaaggttatttttgtatttttagggggcttaaagagatattgggggggcctaaaaagcaatc 49603419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 49604095 - 49604159
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  49604095 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatc 49604159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 39232789 - 39232852
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39232789 tataaagattatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatc 39232852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 2519622 - 2519556
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  2519622 tataaaggttatttttgtatttttaaggggcctaaagagatattg-gagggcctaaaaagcaatcctc 2519556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 46513674 - 46513736
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaa 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  46513674 tataaagattatttttgtatttttagggggcctaaagagatatttggggggcctaaaaagcaa 46513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 25699353 - 25699288
Alignment:
Q  41 taaaggttatttttgtatttttagggggcctaaagagatattgag---ggggcctaaaaagcaatc 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||   |||| |||||||||||||    
T  25699353 taaaggttattttcgtatttttagggggcctaaagagatattgagggaggggtctaaaaagcaatc 25699288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 42020973 - 42021064
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttattttt-gtatttttagggg-gcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||| |||||||   || |||||||||||||||| ||||||||| | | ||||||||||||||||| |||| ||||||||||||||||    
T  42020973 ggtatttaactaccggacttcttataaaggttatttttcgtatttttaagagagcctaaagagatattgaaggggtctaaaaagcaatcctc 42021064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 2528674 - 2528738
Alignment:
Q  42 aaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    ||||| |||||| | ||||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  2528674 aaaggctattttcgaatttttaggggacctaaagagatatt-agggggcctaaaaagcaatactct 2528738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 26355291 - 26355227
Alignment:
Q  38 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||| |||| ||||||||| |||||||||||||| |||||||| || ||||||||||||||||    
T  26355291 gtataaaagttaattttgtattattagggggcctaaacagatattg-ggaggcctaaaaagcaatc 26355227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 14090778 - 14090718
Alignment:
Q  46 gttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||| |||||||| ||||||||||| |||||||| || | ||||||||||||||||||    
T  14090778 gttattttcgtattttttgggggcctaaatagatattg-ggagacctaaaaagcaatcctct 14090718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 42020445 - 42020403
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatat 81  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||    
T  42020445 tataaagattattttcgtatttttagggggcctaaatagatat 42020403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 441358 - 441307
Alignment:
Q  51 ttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||| ||||    
T  441358 ttttgtaattttagggggcctaaagagata-tgaggggctctaaaaagaaatc 441307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 18038 - 18128
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18038 ggtatttatctaccagaagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaaccctct 18128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 17397 - 17308
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17397 ggtatttatctaccggaagtcttataaaggttatttttatatttttagggggcctaaagaaatattgagggggcctaaaaagcaatcctc 17308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 26275516 - 26275427
Alignment:
Q  17 ggtatttatctaccgggagtcgtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctc 106  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26275516 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagagggcctaaagagatattgagggggcctaaaaagcaatcctc 26275427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 305039 - 304975
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  305039 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 305646 - 305710
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  305646 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 305710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 644166 - 644102
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  644166 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 644102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 33775634 - 33775570
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33775634 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 33775570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 19803444 - 19803381
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19803444 tataaaggttatttttgtattttcagggggcctaaagagatattgagggggcctaaaaagcaat 19803381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 33776247 - 33776310
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33776247 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 33776310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 644779 - 644848
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  644779 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggtctaaaaagcaatcttcta 644848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 23950050 - 23950116
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcct 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  23950050 tataaaggttaattttgtatttttagggggcctaaagagatattggaggagcctaaaaagcaatcct 23950116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 22509819 - 22509757
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 103  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  22509819 tataaacgttatttttgtatttttagggggtctaaagagatatt--gggggcctaaaaagcaatc 22509757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 26276178 - 26276228
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgaggggg 89  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  26276178 tataaaggttatttttgtatttttaggggacctaaagagatattggggggg 26276228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 23949193 - 23949144
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgaggggg 89  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||| |||||    
T  23949193 tataaaggttaattttgtatttttaagggg-ctaaagagatattggggggg 23949144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 8208164 - 8208108
Alignment:
Q  51 ttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctcta 108  Q
    ||||| |||||||||| ||||||||||| | || ||||||||||||||||||| ||||    
T  8208164 ttttggatttttagggagcctaaagagaaactg-gggggcctaaaaagcaatcttcta 8208108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 19693878 - 19693811
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctct 107  Q
    ||||||| || |||| |||||||| || ||||||||||||||||  ||||  |||||||||||||||||    
T  19693878 tataaagattgttttcgtattttttggtggcctaaagagatatt-tggggaactaaaaagcaatcctct 19693811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 5145 - 5210
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcc 104  Q
    |||||||| ||||||  |||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  5145 tataaaggatattttcctatttttatgggtcctaaagagatattgatggggcctaaaaagcaatcc 5210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 4815 - 4758
Alignment:
Q  39 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaa 96  Q
    ||||||||||||||| ||||||| | | ||||||||||||||||  |||||| |||||    
T  4815 tataaaggttattttcgtattttaaagaggcctaaagagatatttggggggcttaaaa 4758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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