View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_16 (Length: 276)
Name: NF12860_low_16
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 3776265 - 3776458
Alignment:
| Q |
1 |
aagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagaggataataacaaagccaaaatcaaaggcatc |
100 |
Q |
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| T |
3776265 |
aagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagaggataataacaaagccaaaatcaaaggcatc |
3776364 |
T |
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| Q |
101 |
tatgttgactattgatttattagagaagcttccaacattgcattgcacagctgttaaggttgtgtgattgtaaaaaagatgatcaatttaatta |
194 |
Q |
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| T |
3776365 |
tatgttgactattgatttattagagaagcttccaacattgcattgcactgctgttaaggttgtgtgattgtaaaaaagatgatcaatttaatta |
3776458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 3807971 - 3808150
Alignment:
| Q |
1 |
aagctaaatggttaggtccatgtgaaaggaacacttcaacaa---ctcctcttccaatgggaaa---ttctgagaggataataacaaagccaaaatcaaa |
94 |
Q |
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| T |
3807971 |
aagctaaatggttaggtccatgtgaaaggtacccttcaacaaagtctccactttctattggatcattttctgagaggatcataacaaagcaaaaatcaaa |
3808070 |
T |
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| Q |
95 |
ggcatctatgttgactattgatttattagagaagcttccaacattgcattgcacagctgt---taaggttgtgtgattgt |
171 |
Q |
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| T |
3808071 |
ggtatctatgttgactattgaattatttgataagcttccaacattgcattgcccagctgttgatgaggttgtgtgattgt |
3808150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35365052 - 35364923
Alignment:
| Q |
1 |
aagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagagg-ataataa--caaagccaaaatcaaaggc |
97 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| | | ||| || ||||| ||||||||||| ||| ||| |||||| || ||||||| |
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| T |
35365052 |
aagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagccaaaggc |
35364953 |
T |
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| Q |
98 |
atctatgttgactattgatttattagagaa |
127 |
Q |
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| T |
35364952 |
atcaatgttaaccattgatttattagagaa |
35364923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35373168 - 35373097
Alignment:
| Q |
1 |
aagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagagga |
72 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| | | ||| || ||||| |||||||||||| |
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| T |
35373168 |
aagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagagga |
35373097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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