View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_20 (Length: 250)
Name: NF12860_low_20
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 15966489 - 15966402
Alignment:
| Q |
155 |
tgaccatgaagtgtttatagtaaatgcattgcaatggtaacataccttaaatgcatttgtgaagtgtccctttttcaatcttcatctc |
242 |
Q |
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| T |
15966489 |
tgaccatgaagtggttttagtaaatgcattgcaatggtaacataccttaaatgcatttgtgaagtggccctttttcaatcttcatctc |
15966402 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 15966542 - 15966514
Alignment:
| Q |
129 |
atttctacatgcctatccttgcagtgtga |
157 |
Q |
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| T |
15966542 |
atttctacatgcctatccttgcagtgtga |
15966514 |
T |
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