View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12860_low_23 (Length: 241)

Name: NF12860_low_23
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12860_low_23
NF12860_low_23
[»] chr8 (5 HSPs)
chr8 (91-197)||(31372204-31372310)
chr8 (91-198)||(11659322-11659430)
chr8 (91-196)||(11668493-11668599)
chr8 (200-228)||(31372326-31372354)
chr8 (200-228)||(31385511-31385539)
[»] chr7 (4 HSPs)
chr7 (91-197)||(32248987-32249094)
chr7 (91-198)||(33426451-33426559)
chr7 (91-197)||(47815554-47815661)
chr7 (91-174)||(37504387-37504471)
[»] chr1 (3 HSPs)
chr1 (91-197)||(28851115-28851222)
chr1 (91-197)||(2170131-2170237)
chr1 (94-190)||(39482765-39482862)
[»] chr6 (1 HSPs)
chr6 (91-196)||(10460836-10460942)
[»] chr4 (1 HSPs)
chr4 (137-197)||(53239122-53239182)
[»] chr2 (1 HSPs)
chr2 (91-180)||(4867956-4868046)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 31372204 - 31372310
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccatctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatatg 190  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31372204 tggtggtgctaattctataatcctatcaaacttacttgttccatctgttaaaaaactattggccattttagtttgaagtattggtacatacaaatatatg 31372303  T
Q  191 agtgtac 197  Q
    |||||||    
T  31372304 agtgtac 31372310  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 11659430 - 11659322
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| |||||||  ||| ||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  11659430 tggtggtgctaattctataatccagtcatacttacttgttccatgctgtcaaaaatctattgaccattttaatttggagtattggtacatacaaatatat 11659331  T
Q  190 gagtgtaca 198  Q
    |||||||||    
T  11659330 gagtgtaca 11659322  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 11668599 - 11668493
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| |||||||  ||| |||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11668599 tggtggtgctaattctataatccagtcatacttacttgttctatgctgtcaaaaatctattggccattttaatttggagtattggtacatacaaatatat 11668500  T
Q  190 gagtgta 196  Q
    | |||||    
T  11668499 gggtgta 11668493  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 31372326 - 31372354
Alignment:
Q  200 taagaattgtgttggatatatatggaata 228  Q
    |||||||||||||||||||||||||||||    
T  31372326 taagaattgtgttggatatatatggaata 31372354  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 31385511 - 31385539
Alignment:
Q  200 taagaattgtgttggatatatatggaata 228  Q
    |||||||||||||||||||||||||||||    
T  31385511 taagaattgtgttggatatatatggaata 31385539  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 32248987 - 32249094
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32248987 tggtggtgctaattctataatccagtcaaacttacttgttccatgctatcaaaaaactattggtcattttaatttggagtattggtacatacaaatatat 32249086  T
Q  190 gagtgtac 197  Q
    | ||||||    
T  32249087 gggtgtac 32249094  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 33426559 - 33426451
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  33426559 tggtggtgctaattctataatccaatcaaacttacttgttccatgctgtcaaaaaactattgaccattttagtttggagtattgatacatacaaatatat 33426460  T
Q  190 gagtgtaca 198  Q
    | |||||||    
T  33426459 gggtgtaca 33426451  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 47815554 - 47815661
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccatcta-tcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| ||||| |  ||||||||| ||||||||| |  ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  47815554 tggtggtgctaattctataattcagtcaaacttatttgttccatgttgtcaaaaaactattggccattttagtttggagtattgttacatacaaatatat 47815653  T
Q  190 gagtgtac 197  Q
    | ||||||    
T  47815654 gggtgtac 47815661  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 37504387 - 37504471
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattgg 174  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| || ||||||||||||| | |||||||||||||||||||||    
T  37504387 tggtggtgctaattctataatctactcaaacttacttgttccatgctgtcaaaaaactattcgtcattttaatttggagtattgg 37504471  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 28851222 - 28851115
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| || ||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  28851222 tggtggtgctaattctataatccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtctagagtattggtacatacaaatatat 28851123  T
Q  190 gagtgtac 197  Q
    | ||||||    
T  28851122 gggtgtac 28851115  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 2170237 - 2170131
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| ||||| |  ||||||||||||||| ||| || ||||||| |||||| |||||||| || |||||||||||||||||||||||||    
T  2170237 tggtggtgctaattctataattcagtcaaacttacttgttgcatgctgtcaaaaa-ctattgaccattttagttaggagtattggtacatacaaatatat 2170139  T
Q  190 gagtgtac 197  Q
    | ||||||    
T  2170138 gggtgtac 2170131  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 39482765 - 39482862
Alignment:
Q  94 tggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatatg 190  Q
    |||||||||||| ||||||   ||||||||||||||| ||| || |||||||||||||| ||||||||||||| ||||||| || |||||||| ||||    
T  39482765 tggtgctaattctataatcgagtcaaacttacttgtttcatgctgtcaaaaaactattgaccattttaatttgaagtattgatatatacaaatgtatg 39482862  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 10460942 - 10460836
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacatacaaatatat 189  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  10460942 tggtggtgctaattctataatccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtttggaatattgatacatacaaatatat 10460843  T
Q  190 gagtgta 196  Q
    | |||||    
T  10460842 gggtgta 10460836  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 53239182 - 53239122
Alignment:
Q  137 atcaaaaaactattggccattttaatttggagtattggtacatacaaatatatgagtgtac 197  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  53239182 atcaaaaaactattgaccattttagtttggagtattggtacatacaaatatatgggtgtac 53239122  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 4867956 - 4868046
Alignment:
Q  91 tggtggtgctaattccataatcctatcaaacttacttgttccat-ctatcaaaaaactattggccattttaatttggagtattggtacata 180  Q
    |||||||||||| || | |||||  ||||||||||||||||||| || ||| ||||||||||| ||||||  |||||||||| ||||||||    
T  4867956 tggtggtgctaaatctacaatccagtcaaacttacttgttccatactgtcagaaaactattggtcattttggtttggagtatcggtacata 4868046  T

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