View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_24 (Length: 239)
Name: NF12860_low_24
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 47572518 - 47572730
Alignment:
| Q |
11 |
cacagacaaccaaaaactatatggttatgtttggtgcgtcccatacctatcttcagaaaactgtagctggtgtcttagcgatgccatagcagaaattcca |
110 |
Q |
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| T |
47572518 |
cacagacaaccaaaaactatatggttatgtttggtgcgtcccatacctatcttcagaaaactgtagctggtgtcttagcgatgccatagcagaaattcca |
47572617 |
T |
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| Q |
111 |
actagttgttgcagaggaaaatttggaggagcaatattttatcccagttgtggtcttaaatttgacttaaatcctttccacaaggcacacaacaatgttg |
210 |
Q |
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| T |
47572618 |
actagttgttgcagaggaaaatctggaggagcaatattttatcccagttgtggtcttaaatttgacttaaatcctttccacaaggcacacaacaatgttg |
47572717 |
T |
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| Q |
211 |
cttgggggccacc |
223 |
Q |
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||||||||||||| |
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| T |
47572718 |
cttgggggccacc |
47572730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 47582216 - 47582411
Alignment:
| Q |
11 |
cacagacaaccaaaaactatatggttatgtttggtgcgtcccatacctatcttcagaaaactgtagctggtgtcttagcgatgccatagcagaaattcca |
110 |
Q |
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|||||| ||||||||| ||||||| || ||||||| |||||| ||||||| |||| ||||| |||||||||||||| ||||||||||| ||| ||||| |
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| T |
47582216 |
cacagaaaaccaaaaagtatatggcggtgcttggtgcctcccatgcctatctgcagagaactgcagctggtgtcttagtgatgccatagctgaagttcca |
47582315 |
T |
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| Q |
111 |
actagttgttgcagaggaaaatttggaggagcaatattttatcccagttgtggtcttaaatttgacttaaatcctttccacaaggcacacaacaat |
206 |
Q |
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| T |
47582316 |
accagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattccacaaggcagacgacaat |
47582411 |
T |
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