View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12860_low_25 (Length: 229)
Name: NF12860_low_25
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_25 |
 | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold1526 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 949 - 1171
Alignment:
| Q |
1 |
ccataacggtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagtgttacggtgaagaggtgggaaattggaaatgccatgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
949 |
ccataactgtaataggggcggaggggtcggatccaggagggaaaccgacggaaggggtaagggttagggtgaagaggtgggaaattggaaatgccatgga |
1048 |
T |
|
| Q |
101 |
aagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1049 |
aagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgttt |
1148 |
T |
|
| Q |
201 |
ggtggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1149 |
ggtggaagttgggggttaggagg |
1171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44495854 - 44495632
Alignment:
| Q |
1 |
ccataacggtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagtgttacggtgaagaggtgggaaattggaaatgccatgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44495854 |
ccataactgtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagggttagggtgaagaggtgggaaattggaaatgccatgga |
44495755 |
T |
|
| Q |
101 |
aagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44495754 |
aagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggaataggatttgagtttgccgtgttcggtcatgattgtttgttt |
44495655 |
T |
|
| Q |
201 |
ggtggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44495654 |
ggtggaagttgggggttaggagg |
44495632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4450 - 4230
Alignment:
| Q |
3 |
ataacggtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagtgttacggtgaagaggtgggaaattggaaatgccatggaaa |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4450 |
ataactgtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagggttagggtgaagaggtgggaaattggaaatgccatggaaa |
4351 |
T |
|
| Q |
103 |
gactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgtttgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4350 |
gactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgg |
4251 |
T |
|
| Q |
203 |
tggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4250 |
tggaagttgggggttaggagg |
4230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 14362 - 14142
Alignment:
| Q |
3 |
ataacggtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagtgttacggtgaagaggtgggaaattggaaatgccatggaaa |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14362 |
ataactgtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagggttagggtgaagaggtgggaaattggaaatgccatggaaa |
14263 |
T |
|
| Q |
103 |
gactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgtttgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14262 |
gactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgg |
14163 |
T |
|
| Q |
203 |
tggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14162 |
tggaagttgggggttaggagg |
14142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 24619 - 24839
Alignment:
| Q |
3 |
ataacggtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagtgttacggtgaagaggtgggaaattggaaatgccatggaaa |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24619 |
ataactgtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagggttagggtgaagaggtgggaaattggaaatgccatggaaa |
24718 |
T |
|
| Q |
103 |
gactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgtttgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24719 |
gactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgg |
24818 |
T |
|
| Q |
203 |
tggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24819 |
tggaagttgggggttaggagg |
24839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3378582 - 3378362
Alignment:
| Q |
1 |
ccataacggtaataggggcggaggggtcggatccaggagggaaaccgacggcaggggtaagtgttacggtgaagaggtgggaaattggaaatgccatgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3378582 |
ccataactgtaataggggcggaggggtcggatccaggagggaaaccgacggagggggtaagggttagggtgaagaggtgggaaattggaaatgccatgga |
3378483 |
T |
|
| Q |
101 |
aagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
3378482 |
aagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatttga--aaggattgttcggtcatgattgtttgttt |
3378385 |
T |
|
| Q |
201 |
ggtggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3378384 |
ggtggaagttgggggttaggagg |
3378362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 30355936 - 30355844
Alignment:
| Q |
127 |
gattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattgtttgt-ttggtggaagttgggggtta |
218 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
30355936 |
gattgcgacggtggctgaggagggtggccggaggaggatttgggtttgtcgtgttcggtcatgattgtttgtgttggtgggagttgggggtta |
30355844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 15707615 - 15707486
Alignment:
| Q |
94 |
ccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatgattg |
193 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15707615 |
ccatggaaagactcgtactaaagaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattg |
15707516 |
T |
|
| Q |
194 |
tttgtttggtggaagttgggggttaggagg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15707515 |
tttgtttggtggaagttgggggttaggagg |
15707486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 53719 - 53811
Alignment:
| Q |
135 |
cgacggcggaggagggtggccggagtaggattcgagtttgccgtgttcggtcatga----ttgtttgtttggtggaagttgggggttaggagg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53719 |
cgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagg |
53811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 53659 - 53698
Alignment:
| Q |
1 |
ccataacggtaataggggcggaggggtcggatccaggagg |
40 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53659 |
ccataactgtaataggggcggaggggtcggatccaggagg |
53698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 36932925 - 36933017
Alignment:
| Q |
54 |
ggggtaagtgttacggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggagg |
146 |
Q |
| |
|
|||||||| |||| ||| | | ||||||| |||| |||||||||||||||| |||||| ||||||| || |||||| ||||||||||||| |
|
|
| T |
36932925 |
ggggtaagggttagggtaaggtggtgggagattgaaaatgccatggaaagagtcgtacagaggaggtgaaagggattggaacgacggcggagg |
36933017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 36933042 - 36933076
Alignment:
| Q |
189 |
gattgtttgtttggtggaagttgggggttaggagg |
223 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36933042 |
gattgtttgttcggtggaagttgggggttaggagg |
36933076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University