View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12860_low_3 (Length: 509)

Name: NF12860_low_3
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12860_low_3
NF12860_low_3
[»] chr1 (3 HSPs)
chr1 (10-492)||(41418112-41418594)
chr1 (381-464)||(9905790-9905873)
chr1 (381-464)||(9908181-9908264)
[»] scaffold0274 (2 HSPs)
scaffold0274 (160-374)||(6021-6235)
scaffold0274 (10-155)||(6209-6353)
[»] scaffold0271 (2 HSPs)
scaffold0271 (160-374)||(3056-3270)
scaffold0271 (10-155)||(2938-3082)
[»] chr7 (5 HSPs)
chr7 (381-493)||(7737335-7737449)
chr7 (383-491)||(36647489-36647599)
chr7 (381-493)||(48821855-48821969)
chr7 (381-464)||(35130599-35130683)
chr7 (381-465)||(40772871-40772957)
[»] chr4 (5 HSPs)
chr4 (381-493)||(27510483-27510597)
chr4 (381-465)||(13436434-13436519)
chr4 (450-493)||(5444746-5444789)
chr4 (450-493)||(35783747-35783790)
chr4 (435-492)||(11001349-11001406)
[»] chr2 (3 HSPs)
chr2 (381-493)||(6016847-6016958)
chr2 (383-493)||(36316286-36316397)
chr2 (388-465)||(12015127-12015206)
[»] scaffold0263 (1 HSPs)
scaffold0263 (381-493)||(22935-23048)
[»] chr5 (8 HSPs)
chr5 (383-493)||(31185993-31186102)
chr5 (380-493)||(43233849-43233964)
chr5 (381-492)||(35304676-35304788)
chr5 (381-493)||(35309147-35309260)
chr5 (381-472)||(39040539-39040630)
chr5 (380-464)||(25213823-25213908)
chr5 (380-464)||(25277973-25278058)
chr5 (379-422)||(27405304-27405347)
[»] chr8 (6 HSPs)
chr8 (387-493)||(37870-37976)
chr8 (381-494)||(11080198-11080312)
chr8 (381-472)||(4678152-4678243)
chr8 (383-472)||(4676207-4676296)
chr8 (381-465)||(26174318-26174404)
chr8 (435-465)||(26175463-26175493)
[»] chr3 (4 HSPs)
chr3 (381-473)||(35610872-35610966)
chr3 (381-493)||(39091329-39091442)
chr3 (381-464)||(27825693-27825777)
chr3 (381-464)||(33785843-33785927)
[»] chr6 (4 HSPs)
chr6 (423-489)||(9231546-9231611)
chr6 (381-467)||(6860162-6860250)
chr6 (436-490)||(23306856-23306913)
chr6 (435-465)||(10774572-10774602)
[»] scaffold0017 (1 HSPs)
scaffold0017 (436-489)||(182998-183051)


Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 492
Target Start/End: Complemental strand, 41418594 - 41418112
Alignment:
Q  10 gcaaaggcggaagatttaccaatacaatgatgaattttaattgctctgtagtgtatttagtcaaacgacaatgtgttgtttaaagtgatgcttgaatatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41418594 gcaaaggcggaagatttaccaatacaatgatgaattttaattgctccatagtgtatttagtcaaacgacaatgtgttgtttaaagtgatgcttgaatacg 41418495  T
Q  110 atagtttagtgtattcttgatatcaaggtgaatacaacataaacacacaagtatcaaggtgaatacaagagaaacacgcaaatcacggtaagccaccgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41418494 atagtttagtgtattcttgatatcaaggtgaatacaacataaacacacaagtatcaaggtgaatacaagagaaacacgcaaatcacggtaagccaccgtt 41418395  T
Q  210 gttttgtaaaagtcacaggatgtagcttttgcaaactcactacacctctttgtaatcctatcaaacccaccgtgatactcgagaccaaacgtgcactctt 309  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41418394 gttttgtaaaagtcacagaatgtagcttttgcaaactcactacacctctttgtaatcctatcaaacccaccgtgatactcgagaccaaacatgcactctt 41418295  T
Q  310 tgttgaggtgtatgtggtgctatttatactttgtttagcgggtaatttggattggagactcatggtacggttgttaggaaacatgatattcaatgaagga 409  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41418294 tgttgaggtgtatgtggtgctgtttatactttgcttagcgggtaatttggattggagactcatggtacggttgttaggaaacatgatatccaatgaagga 41418195  T
Q  410 attagagaaaactaagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttctaatgaggtggtta 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41418194 attagagaaaactaagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttctaatgaggtggtta 41418112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 464
Target Start/End: Original strand, 9905790 - 9905873
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatga 464  Q
    |||||||||||||||||| |||  ||||||| |||||||||| | ||  |||||  |||||||||||| |||||||||||||||||    
T  9905790 tgttaggaaacatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgataaa-gtgaatattacaaatga 9905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 464
Target Start/End: Original strand, 9908181 - 9908264
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatga 464  Q
    |||||||||||||||||| |||  ||||||| |||||||||| | ||  |||||  |||||||||||| |||||||||||||||||    
T  9908181 tgttaggaaacatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgataaa-gtgaatattacaaatga 9908264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 160 - 374
Target Start/End: Complemental strand, 6235 - 6021
Alignment:
Q  160 gtatcaaggtgaatacaagagaaacacgcaaatcacggtaagccaccgttgttttgtaaaagtcacaggatgtagcttttgcaaactcactacacctctt 259  Q
    |||||||||||||||||| | ||||||||||||||  |||||||| |||| ||||||||| ||||||  || |||||||||||||||||||| |||||||    
T  6235 gtatcaaggtgaatacaacataaacacgcaaatcatagtaagccatcgttattttgtaaaggtcacaaaatatagcttttgcaaactcactatacctctt 6136  T
Q  260 tgtaatcctatcaaacccaccgtgatactcgagaccaaacgtgcactctttgttgaggtgtatgtggtgctatttatactttgtttagcgggtaatttgg 359  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |||| |||| | || |||||||| |||||||| | ||||     
T  6135 tgtaatcctatcaaacccaccatgataatcgagaccaaacatgcactctttgttgaggtctatgcggtgttgttcatactttgcttagcggggagtttgt 6036  T
Q  360 attggagactcatgg 374  Q
    |||||||||||||||    
T  6035 attggagactcatgg 6021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 6353 - 6209
Alignment:
Q  10 gcaaaggcggaagatttaccaatacaatgatgaattttaattgctctgtagtgtatttagtcaaacgacaatgtgttgtttaaagtgatgcttgaatatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||| |||||||||||||| ||||||||  ||||||||    
T  6353 gcaaaggcggaagatttaccaatacaatgatgaattttaattgctccatagtgtacttagttaaacaacaatgtgttgttt-aagtgatgactgaatatg 6255  T
Q  110 atagtttagtgtattcttgatatcaaggtgaatacaacataaacac 155  Q
    |||||||||  |||| ||| ||||||||||||||||||||||||||    
T  6254 atagtttagcatatttttggtatcaaggtgaatacaacataaacac 6209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 160 - 374
Target Start/End: Original strand, 3056 - 3270
Alignment:
Q  160 gtatcaaggtgaatacaagagaaacacgcaaatcacggtaagccaccgttgttttgtaaaagtcacaggatgtagcttttgcaaactcactacacctctt 259  Q
    |||||||||||||||||| | ||||||||||||||  |||||||| |||| ||||||||| ||||||  || |||||||||||||||||||| |||||||    
T  3056 gtatcaaggtgaatacaacataaacacgcaaatcatagtaagccatcgttattttgtaaaggtcacaaaatatagcttttgcaaactcactatacctctt 3155  T
Q  260 tgtaatcctatcaaacccaccgtgatactcgagaccaaacgtgcactctttgttgaggtgtatgtggtgctatttatactttgtttagcgggtaatttgg 359  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |||| |||| | || |||||||| |||||||| | ||||     
T  3156 tgtaatcctatcaaacccaccatgataatcgagaccaaacatgcactctttgttgaggtctatgcggtgttgttcatactttgcttagcggggagtttgt 3255  T
Q  360 attggagactcatgg 374  Q
    |||||||||||||||    
T  3256 attggagactcatgg 3270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 2938 - 3082
Alignment:
Q  10 gcaaaggcggaagatttaccaatacaatgatgaattttaattgctctgtagtgtatttagtcaaacgacaatgtgttgtttaaagtgatgcttgaatatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||| |||||||||||||| ||||||||  ||||||||    
T  2938 gcaaaggcggaagatttaccaatacaatgatgaattttaattgctccatagtgtacttagttaaacaacaatgtgttgttt-aagtgatgactgaatatg 3036  T
Q  110 atagtttagtgtattcttgatatcaaggtgaatacaacataaacac 155  Q
    |||||||||  |||| ||| ||||||||||||||||||||||||||    
T  3037 atagtttagcatatttttggtatcaaggtgaatacaacataaacac 3082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 381 - 493
Target Start/End: Complemental strand, 7737449 - 7737335
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||  ||||    
T  7737449 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgataagagatatcttc 7737350  T
Q  479 taatgaggtggttac 493  Q
    |||||||||| ||||    
T  7737349 taatgaggtgattac 7737335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 491
Target Start/End: Original strand, 36647489 - 36647599
Alignment:
Q  383 ttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagatgccttcta 480  Q
    |||| ||||||||||| ||||||| |||| |||||||||| |||   | |||| ||||||||||||| ||||||| | |||||||||||||| |||||||    
T  36647489 ttagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatataagaaatgataagagataccttcta 36647588  T
Q  481 atgaggtggtt 491  Q
    |||||||||||    
T  36647589 atgaggtggtt 36647599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 493
Target Start/End: Original strand, 48821855 - 48821969
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    ||||| |||||||||||| ||  |||| ||| |||||||||| |||   | |||| |||||||||||| |||||||||||||||| ||| ||||||||||    
T  48821855 tgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaatggtaaaagatgccttc 48821954  T
Q  479 taatgaggtggttac 493  Q
    |||| ||||||||||    
T  48821955 taataaggtggttac 48821969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 35130683 - 35130599
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatga 464  Q
    |||||||||||||||||| |||||||||||| ||||||||||  || | | |||  ||||||||| ||||||||||||||||||||    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaaatga 35130599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 40772871 - 40772957
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgat 465  Q
    |||||| |||||| |||| ||| |||||||| |||||||||| | ||  | |||  |||||||||||||||||||||||||||||||    
T  40772871 tgttagtaaacatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgat 40772957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 493
Target Start/End: Original strand, 27510483 - 27510597
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||   |||||| ||||||||||||||||||||||||||||||| | || | |||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgatcaaaggttccttc 27510582  T
Q  479 taatgaggtggttac 493  Q
    |||||||||| ||||    
T  27510583 taatgaggtgattac 27510597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 13436434 - 13436519
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact-aagattctttcaattgatgataaaagtgaatattacaaatgat 465  Q
    ||||||||||||||||||| ||  ||||||| |||||||||| |||||| |||  |||||||||||||||||||||||||||||||    
T  13436434 tgttaggaaacatgatatttaagaaaggaatgagagaaaactcaagattatttttattgatgataaaagtgaatattacaaatgat 13436519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 5444789 - 5444746
Alignment:
Q  450 gaatattacaaatgataagagatgccttctaatgaggtggttac 493  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  5444789 gaatattacaaatgataagagataccttctaatgaggtggttac 5444746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 35783790 - 35783747
Alignment:
Q  450 gaatattacaaatgataagagatgccttctaatgaggtggttac 493  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  35783790 gaatattacaaatgataagagacaccttctaatgaggtggttac 35783747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 492
Target Start/End: Original strand, 11001349 - 11001406
Alignment:
Q  435 attgatgataaaagtgaatattacaaatgataagagatgccttctaatgaggtggtta 492  Q
    ||||||||||||||||||| ||||| ||||||| | || ||||||| |||| ||||||    
T  11001349 attgatgataaaagtgaatgttacagatgataaaaaataccttctagtgagatggtta 11001406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 381 - 493
Target Start/End: Original strand, 6016847 - 6016958
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttcta 480  Q
    |||||||||||||||||| ||||||||||||  || |||||| ||| | |||| ||||||||||||||||||| |||| ||||||||||||| |||||||    
T  6016847 tgttaggaaacatgatatccaatgaaggaatgggaaaaaactcagaatatttctattgatgataaaagtgaatgttac-aatgataagagataccttcta 6016945  T
Q  481 atgaggtggttac 493  Q
    |||||||||||||    
T  6016946 atgaggtggttac 6016958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 383 - 493
Target Start/End: Original strand, 36316286 - 36316397
Alignment:
Q  383 ttaggaaacatgatattcaatgaaggaattagagaaaactaag--attctttcaattgatgataaaagtgaatattacaaatgataagagatgccttcta 480  Q
    |||||||||||||||| |||||||||||| |||||||||| ||  | | |||| |||||||||||||||||||||||| ||||||| ||||| |||||||    
T  36316286 ttaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattac-aatgatatgagataccttcta 36316384  T
Q  481 atgaggtggttac 493  Q
    |||||||||||||    
T  36316385 atgaggtggttac 36316397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 465
Target Start/End: Complemental strand, 12015206 - 12015127
Alignment:
Q  388 aaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgat 465  Q
    ||||||||||| ||| ||| |||| |||||||||| | ||  | |||  |||||||||||||||||||||||||||||||    
T  12015206 aaacatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaaatgat 12015127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 381 - 493
Target Start/End: Complemental strand, 23048 - 22935
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    |||||||||||||||||| |||||||||||| ||||||||||  || | | |||| |||||||||||||||||||||||| ||||||||||| | |||||    
T  23048 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattac-aatgataagagctaccttc 22950  T
Q  479 taatgaggtggttac 493  Q
    |||||||||||||||    
T  22949 taatgaggtggttac 22935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 383 - 493
Target Start/End: Original strand, 31185993 - 31186102
Alignment:
Q  383 ttaggaaacatgatattcaatgaaggaattagagaaaactaagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttctaat 482  Q
    |||||||||||||||| ||| |||||||| |||||||||| | | | |||| |||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  31185993 ttaggaaacatgatatccaacgaaggaatgagagaaaactcataatatttctattgatgataaaagtgaatattac-aatgatatgagataccttctaat 31186091  T
Q  483 gaggtggttac 493  Q
    |||||||||||    
T  31186092 gaggtggttac 31186102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 493
Target Start/End: Complemental strand, 43233964 - 43233849
Alignment:
Q  380 ttgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatgataagagatgcctt 477  Q
    |||||||||||||||  || ||  |||||||| ||||||||||  |||| |||||| ||||||||||||  |||||||||||||||||||||||| | ||    
T  43233964 ttgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaatgataagagatacttt 43233865  T
Q  478 ctaatgaggtggttac 493  Q
    |||| |||||| ||||    
T  43233864 ctaaagaggtgattac 43233849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 35304676 - 35304788
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    ||||||||||||||||||||||||||| ||| |||  || || |||   | |||| ||||||||||||||||||||||| || |||||||| || |||||    
T  35304676 tgttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatattataa-tgataagaaataccttc 35304774  T
Q  479 taatgaggtggtta 492  Q
    ||||||||||||||    
T  35304775 taatgaggtggtta 35304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 381 - 493
Target Start/End: Original strand, 35309147 - 35309260
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaa--gattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    |||||||||||||||||| |||||||||||| ||| |||  | |  || | |||| ||||||||||||||| |||||||| |||||||||||||  |||     
T  35309147 tgttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagtaaatattac-aatgataagagatagctta 35309245  T
Q  479 taatgaggtggttac 493  Q
    |||||||||||||||    
T  35309246 taatgaggtggttac 35309260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 39040539 - 39040630
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagat 472  Q
    |||||||||||||||||| ||   ||||||| ||||||||||||||   | |||| |||||||||||||||||||||||| |||||||||||||    
T  39040539 tgttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattac-aatgataagagat 39040630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 464
Target Start/End: Complemental strand, 25213908 - 25213823
Alignment:
Q  380 ttgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatga 464  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||  || | | |||  ||||||||| ||||||||||||||||||||    
T  25213908 ttgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaatga 25213823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 464
Target Start/End: Complemental strand, 25278058 - 25277973
Alignment:
Q  380 ttgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatga 464  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||  || | | |||  ||||||||| ||||||||||||||||||||    
T  25278058 ttgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaatga 25277973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 27405304 - 27405347
Alignment:
Q  379 gttgttaggaaacatgatattcaatgaaggaattagagaaaact 422  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  27405304 gttgttaggaaacatgatatccaatgaaggaatgagagaaaact 27405347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 387 - 493
Target Start/End: Complemental strand, 37976 - 37870
Alignment:
Q  387 gaaacatgatattcaatgaaggaattagagaaaactaagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttctaatgagg 486  Q
    |||| ||||||| |||||||||||| |||||||| |||||  ||||| ||| ||||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  37976 gaaatatgatatccaatgaaggaatgagagaaaattaagagactttctatttatgataaaagtgaatgttacaaatgataagagatatcttttaatgagg 37877  T
Q  487 tggttac 493  Q
    |||||||    
T  37876 tggttac 37870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 494
Target Start/End: Complemental strand, 11080312 - 11080198
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaacta--agattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    |||||||||||||||||| ||||||| |||| ||| ||||||   ||| | |||| ||| ||||||||||||||||||| |||||||||||||| |||||    
T  11080312 tgttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatatta-aaatgataagagataccttc 11080214  T
Q  479 taatgaggtggttact 494  Q
    ||||||||| ||||||    
T  11080213 taatgaggtagttact 11080198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 472
Target Start/End: Complemental strand, 4678243 - 4678152
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagat 472  Q
    |||||||||||||||||| ||  |||||||| ||||||||||||||   | |||| |||||||||||||||||||||||| |||||||||||||    
T  4678243 tgttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattac-aatgataagagat 4678152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 4676296 - 4676207
Alignment:
Q  383 ttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataagagat 472  Q
    |||||||||||||||| ||  |||||||| ||||||||||||||   | |||| |||||||||||||||||||||||| |||||||||||||    
T  4676296 ttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattac-aatgataagagat 4676207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 26174404 - 26174318
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgat 465  Q
    |||||| ||||||||||| ||| |||||||| |||||||||| | ||  | |||  |||||||||||||||||||||||||||||||    
T  26174404 tgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgat 26174318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 465
Target Start/End: Complemental strand, 26175493 - 26175463
Alignment:
Q  435 attgatgataaaagtgaatattacaaatgat 465  Q
    |||||||||||||||||||||||||||||||    
T  26175493 attgatgataaaagtgaatattacaaatgat 26175463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 381 - 473
Target Start/End: Complemental strand, 35610966 - 35610872
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatgataagagatg 473  Q
    |||||||||||||||||| |||||||||||| ||||||||||  |||| |  ||| ||||||||||||| |||| ||||||||||||||||||||    
T  35610966 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaatgataagagatg 35610872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 381 - 493
Target Start/End: Original strand, 39091329 - 39091442
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 478  Q
    ||||| |||||||||||| |||||||||||| ||||||||||  || | | |||| |||||||||| ||||||||||||| |||||||| |||| |||||    
T  39091329 tgttatgaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattac-aatgataaaagataccttc 39091427  T
Q  479 taatgaggtggttac 493  Q
    | |||||||||||||    
T  39091428 tgatgaggtggttac 39091442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 464
Target Start/End: Original strand, 27825693 - 27825777
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatga 464  Q
    |||||||||||||||||| |||||||||||| ||||||||||  || | |||||  ||||||||| ||||||||||||||||||||    
T  27825693 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaatga 27825777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 33785927 - 33785843
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatga 464  Q
    |||||||||||||||||| |||||||||||| ||||||||||  || | |||||  ||||||||| |||||||||| |||||||||    
T  33785927 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaacaatctttgtattgatgat-aaagtgaatagtacaaatga 33785843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 9231611 - 9231546
Alignment:
Q  423 aagattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttctaatgaggtgg 489  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  9231611 aagaatctttctattgatgataaaagtgaatattacaagtgataagagat-ccctctaatgaggtgg 9231546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 6860250 - 6860162
Alignment:
Q  381 tgttaggaaacatgatattcaatgaaggaattagagaaaactaagat--tctttcaattgatgataaaagtgaatattacaaatgataa 467  Q
    |||||| ||||||||||| ||| |||||||| |||||||||| | ||  | |||  |||||||||||||||||||||||||||||||||    
T  6860250 tgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgataa 6860162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 23306913 - 23306856
Alignment:
Q  436 ttgatgataaaagtgaatattacaaatgat---aagagatgccttctaatgaggtggt 490  Q
    ||||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||    
T  23306913 ttgatgataaatgtgaatattacaaatgataaaaagagataccttctaatgaggtggt 23306856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 465
Target Start/End: Original strand, 10774572 - 10774602
Alignment:
Q  435 attgatgataaaagtgaatattacaaatgat 465  Q
    |||||||||||||||||||||||||||||||    
T  10774572 attgatgataaaagtgaatattacaaatgat 10774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 183051 - 182998
Alignment:
Q  436 ttgatgataaaagtgaatattacaaatgataagagatgccttctaatgaggtgg 489  Q
    |||||||||||||||||||||||||||||   ||  | ||||||||||||||||    
T  183051 ttgatgataaaagtgaatattacaaatgaagtgaagtaccttctaatgaggtgg 182998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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