View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_4 (Length: 412)
Name: NF12860_low_4
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 51939288 - 51939035
Alignment:
| Q |
20 |
accggtacttagaaagtacaagacaacctgttgtatttggtttggtgtgaagagtgtcactatagaagcccctttacttgaagtggtttcactaaattgt |
119 |
Q |
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| T |
51939288 |
accggtacttagaaagtacaagacaacctattgtatttggtttggtgtgaagagtgtcactatagaagcccctttacttgaagtggtttcactaaattgt |
51939189 |
T |
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| Q |
120 |
aatcttctttcgccacctaagcctgatgactacgagtcgcgagctgaaattaagttttgtgcttcacatcttacgaaattcagatatgagggtattatac |
219 |
Q |
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| T |
51939188 |
aatcttctttcgccacctaagcctgatgactacgagtcgcgagctgaaattaagttttgtgcttcacatcttacgagattcagttatgagggtattatac |
51939089 |
T |
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| Q |
220 |
catcggataacattgtgctagatgcagacatcgcttctactagtatcgggctat |
273 |
Q |
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| T |
51939088 |
catcggataacattgtgctagatgcagacatcacttctactagtatcgggctat |
51939035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 363
Target Start/End: Complemental strand, 51944124 - 51943911
Alignment:
| Q |
153 |
gagtcgcgagctgaaattaagttttgtgcttcacatcttacgaaattcagatatgagggtattataccatcggataacattgtgctagat---gcagaca |
249 |
Q |
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| T |
51944124 |
gagtcgcatgctgaaattaagctttgtgcttcacatcttaggaaattcagttatcgtggtaatatatcatcagatacctttgtgctagatgcagcagaca |
51944025 |
T |
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| Q |
250 |
tcgcttctactagtatcgggctatacaatttaaaggagacaagtgtgcaagaaacatggattgttctctgcaaacttcttaggattaatgcaaaatgttt |
349 |
Q |
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| T |
51944024 |
ttggttctgctaatattctgatgttcaattttgaggataggaatgtgcaagaaacatggatttttatttgcaaacttcttacagttaatgcaaagtgttt |
51943925 |
T |
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| Q |
350 |
aaagctttctctgc |
363 |
Q |
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| T |
51943924 |
aaatctttgtctgc |
51943911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 51944209 - 51944158
Alignment:
| Q |
62 |
tggtgtgaagagtgtcactatagaagcccctttacttgaagtggtttcacta |
113 |
Q |
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| T |
51944209 |
tggtgtaaagagtgtcactttggaagcgcctttacttgaagtggtttcccta |
51944158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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