View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12860_low_6 (Length: 365)

Name: NF12860_low_6
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12860_low_6
NF12860_low_6
[»] chr2 (4 HSPs)
chr2 (16-323)||(36760086-36760393)
chr2 (16-323)||(36788082-36788389)
chr2 (19-323)||(36775400-36775707)
chr2 (91-323)||(36796485-36796717)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 36760393 - 36760086
Alignment:
Q  16 acaacttgtaggaacaaaaacaaccttccattgtcacgttggggtgtcatttgaagtggttggctttgactaaaaagtgaaggaagtggaggaggaaaac 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36760393 acaacttgtaggaacaaaaacagccttccattgtcacgttggggtgtcatttgaagtggttggctttgactaaaaagtgaaggaagtggaggaggaaaac 36760294  T
Q  116 aacgaatcttcttcaccatgtccaccttttctttcaagttttcatcatcatttgaattgttatcctcagatgatgtgtaagaagagaaaccatctgagcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36760293 aacgaatcttcttcaccatgtccaccttttctttcaagttttcatcatcatttgaattgttatcttcagatgatgtgtaagaagagaaaccatctgagcc 36760194  T
Q  216 agtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattctttgaatttttcacaagtggatgaatataaggaggagttttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36760193 agtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattgtttgaatttttcacaagtggatgaatataaggaggagttttt 36760094  T
Q  316 gattgtga 323  Q
    ||||||||    
T  36760093 gattgtga 36760086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 36788389 - 36788082
Alignment:
Q  16 acaacttgtaggaacaaaaacaaccttccattgtcacgttggggtgtcatttgaagtggttggctttgactaaaaagtgaaggaagtggaggaggaaaac 115  Q
    |||||||||||||||||| |||||||||||||||||||  ||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||    
T  36788389 acaacttgtaggaacaaagacaaccttccattgtcacggcggggcatcatttgaagtggttggctatgactaaagagtgaaggaagtggaggaggataac 36788290  T
Q  116 aacgaatcttcttcaccatgtccaccttttctttcaagttttcatcatcatttgaattgttatcctcagatgatgtgtaagaagagaaaccatctgagcc 215  Q
    ||||    ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36788289 aacgtggtttcttcaccatgtccgccttttctttcaagttttcatcttcgtttgaattgttatcctcatatgatgtgtaagaagagaaaccatctgagcc 36788190  T
Q  216 agtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattctttgaatttttcacaagtggatgaatataaggaggagttttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36788189 agtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattgtttgaatttttcacaagtggatgaatataaggaggagttttt 36788090  T
Q  316 gattgtga 323  Q
    ||||||||    
T  36788089 gattgtga 36788082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 36775707 - 36775400
Alignment:
Q  19 acttgtaggaacaaaaacaaccttccattgtcacgttggggtgtcatttgaagtggttggctttgactaaaaagtgaaggaagtggaggaggaaaacaac 118  Q
    |||| ||||||||||||||| |||||||||||||| |||||  ||||||  |||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  36775707 acttctaggaacaaaaacaatcttccattgtcacggtggggcctcattttgagtggttgactttgactaaagagtaaaggaagtggaggaggaaaacaac 36775608  T
Q  119 gaatcttcttcaccatgtccaccttttctttcaagttttcatcatcatttgaattgttatcctcagatgatgtgtaagaaga---gaaaccatctgagcc 215  Q
    |    ||||||||||||| ||||||||||||||| |||||| |||| || ||||| ||||| ||| ||||||||||||||||   ||| |||||||| ||    
T  36775607 gtggtttcttcaccatgttcaccttttctttcaatttttcaccatccttggaattattatcttcaaatgatgtgtaagaagaaaagaacccatctgatcc 36775508  T
Q  216 agtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattctttgaatttttcacaagtggatgaatataaggaggagttttt 315  Q
    | |||||||||||||  |||| ||||| ||||||||||||||  |||||| |||||| | |||||||||||||||||| |||||||||||||||||||||    
T  36775507 attttctgatccaagaatctcagtgcacatttcaagactcttttcacttaaataattttgtgaatttttcacaagtgggtgaatataaggaggagttttt 36775408  T
Q  316 gattgtga 323  Q
    ||||||||    
T  36775407 gattgtga 36775400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 91 - 323
Target Start/End: Complemental strand, 36796717 - 36796485
Alignment:
Q  91 agtgaaggaagtggaggaggaaaacaacgaatcttcttcaccatgtccaccttttctttcaagttttcatcatcatttgaattgttatcctcagatgatg 190  Q
    ||||||||||||| ||||||| || ||||    ||||||||||||  |||  |||||||||| |||||||||| ||| || |||||||| ||| ||||||    
T  36796717 agtgaaggaagtgaaggaggataagaacgtggtttcttcaccatgctcactatttctttcaatttttcatcataattggagttgttatcttcaaatgatg 36796618  T
Q  191 tgtaagaagagaaaccatctgagccagtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattctttgaatttttcacaag 290  Q
    ||||||||||||| |||||||| |   |||  || ||||| ||||||||||| ||||  ||||||||  |||||| ||| || |||||||||||||||||    
T  36796617 tgtaagaagagaatccatctgaactgctttgagagccaagactctcggtgcagattttgagactcttttcacttaaatagttttttgaatttttcacaag 36796518  T
Q  291 tggatgaatataaggaggagtttttgattgtga 323  Q
    ||| ||||||||||||||||||||||| |||||    
T  36796517 tgggtgaatataaggaggagtttttgaatgtga 36796485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University