View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_7 (Length: 343)
Name: NF12860_low_7
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 9364640 - 9364891
Alignment:
| Q |
18 |
taagcttgtatcttctgtgtttccaatgtttgaagatctttttgttactagttcaagcaaaataatgccaaatgaaaaaacttcactgcttctatcccat |
117 |
Q |
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| T |
9364640 |
taagcttgtatcttctgtgtttccaatgtttgaagatctttttgttactagttcaagcaaaataatgccaaatgaaaaaacttcactgcttctatcccat |
9364739 |
T |
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| Q |
118 |
tcaccacctgccattaagggaaaatattattgttgtgtactacaaatatgtgcattgacttcaaagttacatagtatgtatatttcagattgaaagtctc |
217 |
Q |
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| T |
9364740 |
tcaccacctgccattaaggcaaaa---tattgttatgtattataagtatgtgcattgacttcaaatttacatagtgcatacattttagattaaaagtgtg |
9364836 |
T |
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| Q |
218 |
ttcggtgttcgacctcgacccaaaactgacacatatgattacatttaattattta |
272 |
Q |
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| T |
9364837 |
tctggtgttcgacttagacaaaaaattgacacatatgattacaattaattattta |
9364891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 9400126 - 9400264
Alignment:
| Q |
18 |
taagcttgtatcttctgtgtttccaatgtttgaagatctttttgttactagttcaagcaaaataatgccaaatgaaaaaacttcactgcttctatcccat |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400126 |
taagcttgtatcttctgtgttttcaatgtttgaagatctttttgttactagttcaagcaaaataatgccaaatgaaaaaacttcactgcttctatcccat |
9400225 |
T |
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| Q |
118 |
tcaccacctgccattaagggaaaatattattgttgtgta |
156 |
Q |
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| T |
9400226 |
tcaccacctgtcattaaaggaaaatattagtgttttgta |
9400264 |
T |
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