View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12860_low_8 (Length: 336)
Name: NF12860_low_8
Description: NF12860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12860_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 78 - 320
Target Start/End: Complemental strand, 42850161 - 42849918
Alignment:
| Q |
78 |
gtttgttggttagtgagattcacattgcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtg |
177 |
Q |
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| T |
42850161 |
gtttgttggctagtgagattcacattgcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtg |
42850062 |
T |
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| Q |
178 |
tatattttaacagaaactaaac-aaagttaatagcaggggaggttcttgtttttctgaaaataaaagggaggtttgtgtcattcaagcaaagctcagggg |
276 |
Q |
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| T |
42850061 |
tatattttaacagaaactaaacaaaagttaatagcaggggaggttcttgtttttctgaaaataaaagggaggtttgtgtcattcaagcaaagctcggggg |
42849962 |
T |
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| Q |
277 |
aggtctatgtaatttctcttagaaattcttatgtgacttctctg |
320 |
Q |
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| T |
42849961 |
aggtctatgtaatttctcttagaaattcttatgtgacttctctg |
42849918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 30941792 - 30941887
Alignment:
| Q |
104 |
gcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtgtatattttaacagaaactaaaca |
200 |
Q |
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| T |
30941792 |
gcttgaaaattagagaagaaatgttcctaggtcactgcttgttacgggaggtgaaatatttg-caagcaatgtttatatttcaacggaagctaaaca |
30941887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 30941748 - 30941790
Alignment:
| Q |
24 |
gagttattcatattggattttgattaaatcttggagtttgcat |
66 |
Q |
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| T |
30941748 |
gagttactcatattggattttgattaaatattggagtttgcat |
30941790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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