View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12861_high_1 (Length: 699)
Name: NF12861_high_1
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 19 - 685
Target Start/End: Complemental strand, 28613183 - 28612508
Alignment:
| Q |
19 |
ggtttgataacccacaaaaagttcaaaaaaccataggcctgtccaaccaaccccacttagaattagggtttccaaactcatcacaaactctcaccatgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28613183 |
ggtttgataacccacaaaaagttcaaaaaaccataggcctgtccaaccaaccccacttagaattagggtttccaaactcatcacaaactctcaccatgtg |
28613084 |
T |
|
| Q |
119 |
taatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggt-----catccattttgcatcaactgctggaatcaatatgtcaatataaac |
213 |
Q |
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| T |
28613083 |
tcatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggtgtggtcatccattttgcatcaactgctggaatcaatatgtcgatataaac |
28612984 |
T |
|
| Q |
214 |
atcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612983 |
atcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaa |
28612884 |
T |
|
| Q |
314 |
agattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgtt---atgctat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28612883 |
agattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgttgttatgctat |
28612784 |
T |
|
| Q |
411 |
aagtcatgatcaattattatcagagtctagccctagatttaataatgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagaagct |
510 |
Q |
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| T |
28612783 |
aagtcatgatcaattattatcagagtctagccctagatttaataatgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagaagct |
28612684 |
T |
|
| Q |
511 |
catacacccgtggattgtgaaacttttgttaaatggaggagaaagattagttctgattctgaggttacaaataatagttggattattgctaacacaaaac |
610 |
Q |
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| T |
28612683 |
catacacccgtggattgtgaaacttttgttaaatggaggagaaagattagttctgattctgaggttacaaataatagttggattattgctaacacaaaac |
28612584 |
T |
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| Q |
611 |
catgtcctaattgcaaaatagctattgaga-aaaaccaagggtgcagacacatgaggtgcagattatgtaagtttt |
685 |
Q |
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| T |
28612583 |
catgtcctaattgcaaaatagctattgagaaaaaaccaagggtgcagacacatgaggtgcagattatgtaagtttt |
28612508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 167 - 609
Target Start/End: Complemental strand, 28604295 - 28603847
Alignment:
| Q |
167 |
gtcatccattttgcatcaactgctggaatcaatatgtcaatataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgc |
266 |
Q |
| |
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||||| ||||||||||||| |||||||||||||| || ||| | |||||||||| |||||| |||||||| | ||||||| | |||||||||||||| |
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| T |
28604295 |
gtcattcattttgcatcaattgctggaatcaatacgttgatacccatatcgatgatcataactgcttcaaactcaaatgccctgagccttcttgtaatgc |
28604196 |
T |
|
| Q |
267 |
agctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgat |
366 |
Q |
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|||||| ||| ||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||| | | |
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| T |
28604195 |
agctgtagatgaagacatgattcaacaattagcaagtgagtcaagaaagattaaatacgatcaatttttctttcgttcttatgttgaaaacaacaataac |
28604096 |
T |
|
| Q |
367 |
aggaaattgaagtggtgtcctgctccaaattgttgttatgctataagtcatga--tcaattattatcagagt----ctagccctagatttaataatgatg |
460 |
Q |
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| ||||||||||||||||||||||||| |||||||| ||||||||||| |||| | ||| |||| || ||| ||||| | ||| |||||| |
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| T |
28604095 |
atgaaattgaagtggtgtcctgctccagattgttgtaatgctataagttatgaattaccatatcatcacggttcaagtagttctagaataaattatgatg |
28603996 |
T |
|
| Q |
461 |
ttacatgtcattgttatcatagcttttgttggaattgtggtgaagaagctcatacacccgtggattgtgaaacttttgttaaatggaggagaaagattag |
560 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| | ||| |||||||| || |||| || |
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| T |
28603995 |
ttacatgtctttgttatcatagcttttgttggaattgtggtgaagaagctcacacacctgttgattgtgaaattgttgctaaatggatgaagaagacgag |
28603896 |
T |
|
| Q |
561 |
ttctgattctgaggttacaaataatagttggattattgctaacacaaaa |
609 |
Q |
| |
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|||||| | | || | || | |||| | ||||||||||||||||||||| |
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| T |
28603895 |
ttctgaatttaagatcactactaatggctggattattgctaacacaaaa |
28603847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 456 - 618
Target Start/End: Complemental strand, 28602601 - 28602439
Alignment:
| Q |
456 |
tgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagaagctcatacacccgtggattgtgaaacttttgttaaatggaggagaaag |
555 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||| || ||| |
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| T |
28602601 |
tgatgttacatgtcattgttatcatagtttttgttagaattgtgatgaagaagctcatacacctgtggattgtgaaactgttgctaaatggatgaaaaat |
28602502 |
T |
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| Q |
556 |
attagttctgattctgaggttacaaataatagttggattattgctaacacaaaaccatgtcct |
618 |
Q |
| |
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|||||||| || | | || | || | || | |||||||| |||| |||||||||||||||||| |
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| T |
28602501 |
attagttccgaatttaagatcactactagtggttggattgttgccaacacaaaaccatgtcct |
28602439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 645
Target Start/End: Original strand, 38487310 - 38487503
Alignment:
| Q |
455 |
atgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagaagctcatacacccgtggattgtgaaacttttgttaaatggaggagaaa |
554 |
Q |
| |
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|||||||| |||||| || |||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||| || || ||||| || ||| |
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| T |
38487310 |
atgatgttgcatgtctttattatcatatcttttgtttgcattgtggtgaagaagctcatacacctgtggattgtgaaactgttactagatggatgaaaaa |
38487409 |
T |
|
| Q |
555 |
gattagttctgattctgaggt---tacaaataatagttggattattgctaacacaaaaccatgtcctaattgcaaaatagctattgagaaaaac |
645 |
Q |
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|| | ||||||| | || | ||| | || || | |||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
38487410 |
gaagaactctgattttcagattactactactactactaggattattgcaaacacaaaaccatgtcctaaatgcaagatacatattgagaaaaac |
38487503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 28604445 - 28604353
Alignment:
| Q |
19 |
ggtttgataacccacaaaaagttcaaaaaaccataggcctgtccaaccaaccccacttagaattagggtttccaaactcatcacaaactctca |
111 |
Q |
| |
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|||||||||||| ||||||||||| ||| |||||||| | || ||| || ||||| ||||||||||| || | |||||||||| ||||||| |
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| T |
28604445 |
ggtttgataaccaacaaaaagttcgaaatgccataggcttatcgaacgaaacccacatagaattagggcttgcctactcatcacatactctca |
28604353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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