View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12861_high_13 (Length: 238)
Name: NF12861_high_13
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_high_13 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4351468 - 4351256
Alignment:
| Q |
1 |
cacagtagcaataaaatgcttaaaaaggaaaaccaagagatagttttacaactatatttggttacataccaaaacacataaaatgcttaaaaattaaaat |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
4351468 |
cacagtagcaataaaatgcttaaaaagaaaaaccaagagatggttttacaactatatttggtcacatacaaaaacacataaaatgcttaaaaattaaaat |
4351369 |
T |
|
| Q |
101 |
tgacttattttcatagtagcaattcatgaatgggtttctatagttgttgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4351368 |
tgacttattttcatagtagcaattcatgaatgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagaga |
4351269 |
T |
|
| Q |
201 |
accttagctcacc |
213 |
Q |
| |
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||||||||||||| |
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| T |
4351268 |
accttagctcacc |
4351256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15551 - 15772
Alignment:
| Q |
1 |
cacagtagcaataaaatgcttaaaaaggaaaaccaagagatagttttacaactatatttggttacataccaaaacacataaaatgcttaaaaattaaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
15551 |
cacagtagcaataaaatgcttaaaaaggaaaaccaagagatggttttacatctatatttggtcacatacaaaaacacataaaatgcttaaaaattaaaat |
15650 |
T |
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| Q |
101 |
tgacttattttcatagtagcaattcatgaatgggtttctatagttgttgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagaga |
200 |
Q |
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| T |
15651 |
tggcttattttcatagtagcaattcatgaatgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagag-aaaaatatgaataagaga |
15749 |
T |
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| Q |
201 |
accttagctcaccacgtcaatat |
223 |
Q |
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| T |
15750 |
accttagctcaccacgtcaatat |
15772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29199518 - 29199316
Alignment:
| Q |
1 |
cacagtagcaataaaatgcttaaaaaggaaaaccaagagatagttttacaactatatttggttacatac-ca-aaacacataaaatgcttaaaaattaaa |
98 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||| || || ||||| ||||||||||||||||||||| |
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| T |
29199518 |
cacagtagcaataaaatgcttaaaaagaaaaaccaagagatggttttacaactatagttggtcacacacacagaaacaaataaaatgcttaaaaattaaa |
29199419 |
T |
|
| Q |
99 |
attgacttattttcatagtagcaattcatgaatgggtttctatagttgttgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataaga |
198 |
Q |
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||||||||||||||| | |||||||||| |||| ||| ||| ||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
29199418 |
attgacttattttcaca-tagcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctaaagagaaaaaatatgaataaga |
29199320 |
T |
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| Q |
199 |
gaac |
202 |
Q |
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|||| |
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| T |
29199319 |
gaac |
29199316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 25900970 - 25901152
Alignment:
| Q |
22 |
aaaaaggaaaaccaagagatagttttacaactatatttggttacataccaaaacaca--taaaatgcttaaaaattaaaattgacttattttcatagtag |
119 |
Q |
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||||| ||||||||||||||| ||||||||||||| ||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25900970 |
aaaaaagaaaaccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcacagtag |
25901069 |
T |
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| Q |
120 |
caattcatgaatgggtttctatagttgttgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac |
202 |
Q |
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|||||||||||| ||| | || || |||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |
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| T |
25901070 |
caattcatgaatatgttgcaatcgtcaatgtgaacaatttcaatgtagataaatctcaagagaaaaagtatgaataagagaac |
25901152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 36464059 - 36463997
Alignment:
| Q |
140 |
atagttgttgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac |
202 |
Q |
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||||||| ||||| | ||||||||||| ||||||||||| ||| |||||| | |||||||||| |
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| T |
36464059 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
36463997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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