View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12861_low_12 (Length: 270)
Name: NF12861_low_12
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 18358918 - 18358665
Alignment:
| Q |
1 |
attgcagccattggtgcctagctggtgttcctgatacttggaatcagcttttatatgcaagtctaatttaaaattgattaatgcctattctcaaaagaga |
100 |
Q |
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| T |
18358918 |
attgcagccattggtgcctagctggtgttcctgatacttggaatcagcttttatatgcaagtctaatttaaaattgattaatgcctattctcaaaagaga |
18358819 |
T |
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| Q |
101 |
aaatatatccttagtaaacatgtatattttcatttgtaaaggatgatggaataaggtatctcattacataatctaaatgtgatttttatttgatctatat |
200 |
Q |
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| T |
18358818 |
aaatatatccttagtaaacatgtatattttcatttgtaaaggatgatggaataaggtatctcattacataatctaaatgtgatttttatttgatctatat |
18358719 |
T |
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| Q |
201 |
ataggatgaaattgctcttatctaatatatttgatcaaattttaggttgaattt |
254 |
Q |
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| T |
18358718 |
ataggatgaaattgctcttatctaatatatttgatcaaattttaggttgaattt |
18358665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15113356 - 15113414
Alignment:
| Q |
1 |
attgcagccattggtgcctagctggtgttcctgatacttggaatcagcttttatatgca |
59 |
Q |
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| T |
15113356 |
attgcagccattggtgtctgcctggtgttcctgatacttggaatatgcttttatatgca |
15113414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 50129190 - 50129231
Alignment:
| Q |
3 |
tgcagccattggtgcctagctggtgttcctgatacttggaat |
44 |
Q |
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| T |
50129190 |
tgcagtcattggtgtctagctggtgctcctgatacttggaat |
50129231 |
T |
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