View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12861_low_13 (Length: 255)

Name: NF12861_low_13
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12861_low_13
NF12861_low_13
[»] chr5 (1 HSPs)
chr5 (31-237)||(4351480-4351687)
[»] scaffold0352 (1 HSPs)
scaffold0352 (89-237)||(15391-15539)
[»] chr3 (4 HSPs)
chr3 (31-205)||(29199543-29199718)
chr3 (31-79)||(12572413-12572461)
chr3 (31-79)||(13548877-13548925)
chr3 (31-80)||(19768151-19768200)
[»] chr1 (1 HSPs)
chr1 (91-174)||(51389805-51389888)
[»] chr6 (1 HSPs)
chr6 (31-80)||(22082844-22082893)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 4351687 - 4351480
Alignment:
Q  31 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccacgnnnnnnnn-gctccctcacaaacgattcaagatctaacaatgcccatccg 129  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  4351687 cttacataaacaaaacaaacaatgccgcgtaacacacactgactgccacgaaaaaaaaagctccctcacaaacgattcaagatctaacaatgcccatccg 4351588  T
Q  130 aaattgaatgctcgtaaacttccaatgcactgaaatgattcaagaaagaggacataaaagtgatatcaataactcaatagatgattttacaactacactt 229  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  4351587 aaattgaatgcttgtaaacttccaatgcactgaaatgattcaagaaagaggacataaaaatgatatcaataactcaatagctgattttacaactacactt 4351488  T
Q  230 ggtgtgat 237  Q
    ||||||||    
T  4351487 ggtgtgat 4351480  T

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Target: scaffold0352 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 15391 - 15539
Alignment:
Q  89 gctccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctcgtaaacttccaatgcactgaaatgattcaagaaagaggacataaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  15391 gctccctcacaaacgattcaagatctaacaatgcccatccgaaattaaatgcttgtaaacttccaatgcacagaaatgattcaagaaagaggacataaaa 15490  T
Q  189 gtgatatcaataactcaatagatgattttacaactacacttggtgtgat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15491 gtgatatcaataactcaatagatgattttacaactacacttggtgtgat 15539  T

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Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 29199718 - 29199543
Alignment:
Q  31 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccacgnnnnnnnngctccctcacaaacgattcaagatctaacaatgcccatccga 130  Q
    ||||||||||||||||||| ||||| || |||||||||| ||| ||||||        |||||||||||||||||| |||||||||||| || ||||| |    
T  29199718 cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaa 29199619  T
Q  131 aattgaatgctc-gtaaacttccaatgcactgaaatgattcaagaaagaggacataaaagtgatatcaataactca 205  Q
    | |||||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29199618 atttgaatgctttgtaaacttccaatacactgaaatgatttaagaaagaggacataaaagtgatatcaataactca 29199543  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 12572413 - 12572461
Alignment:
Q  31 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12572413 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 12572461  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 13548877 - 13548925
Alignment:
Q  31 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13548877 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 13548925  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 19768200 - 19768151
Alignment:
Q  31 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccacg 80  Q
    ||||||||||||||||||| ||||| |  |||||||||||||| ||||||    
T  19768200 cttacataaacaaaacacataatgcagtataacacacactgacagccacg 19768151  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 51389805 - 51389888
Alignment:
Q  91 tccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctcgtaaacttccaatgcactgaaatgattcaaga 174  Q
    |||||||||||||||||||  ||| |||| ||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||    
T  51389805 tccctcacaaacgattcaaagtcttacaaagcccatccgaattcgaatgctagtaaatttccaatgcactgaaatgattcaaga 51389888  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 22082893 - 22082844
Alignment:
Q  31 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccacg 80  Q
    ||||||||||||||||||| ||||| |  |||||||||||||| ||||||    
T  22082893 cttacataaacaaaacacataatgcagtataacacacactgacagccacg 22082844  T

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