View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12861_low_17 (Length: 238)

Name: NF12861_low_17
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12861_low_17
NF12861_low_17
[»] chr8 (4 HSPs)
chr8 (9-223)||(43235993-43236195)
chr8 (7-64)||(43235432-43235489)
chr8 (8-60)||(39308673-39308725)
chr8 (3-59)||(39309675-39309731)
[»] chr3 (2 HSPs)
chr3 (9-64)||(34936716-34936771)
chr3 (24-60)||(40613827-40613863)
[»] chr6 (1 HSPs)
chr6 (9-64)||(18065720-18065775)
[»] chr7 (5 HSPs)
chr7 (7-64)||(46294642-46294699)
chr7 (6-64)||(18947287-18947345)
chr7 (3-64)||(18948260-18948321)
chr7 (7-64)||(46295658-46295715)
chr7 (24-60)||(41347096-41347132)
[»] chr4 (2 HSPs)
chr4 (7-64)||(9483674-9483731)
chr4 (16-64)||(29079300-29079348)
[»] chr2 (3 HSPs)
chr2 (7-64)||(41983276-41983333)
chr2 (130-171)||(3497014-3497055)
chr2 (7-60)||(31139553-31139606)
[»] chr1 (2 HSPs)
chr1 (7-64)||(21071289-21071346)
chr1 (8-56)||(18526915-18526963)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 43235993 - 43236195
Alignment:
Q  9 atctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcacttattaaaatgagtgctatgcaatttannnnnnngttggaaattc 108  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||            |||||||||||||       | |||||||||    
T  43235993 atctataaagtgaaaagagataaatggaggcttggtaaatggagcaaagatgcactt------------gctatgcaatttatttttttggtggaaattc 43236080  T
Q  109 aaggaacattattgtctcttaatagtagcaagactaaatagtttgcatctctaatttcccaaaacacttgtaaagcgaagccaacagtagagaagaattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43236081 aaggaacattattgtctcttaatagtagcaagactaaatagtttgcatctctaatttcccaaaacacttgtaaagcgaagccaacagtagagaagaattt 43236180  T
Q  209 tgtaccccaccaaac 223  Q
    |||||||||||||||    
T  43236181 tgtaccccaccaaac 43236195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 43235489 - 43235432
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43235489 acatctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatgcact 43235432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 39308725 - 39308673
Alignment:
Q  8 catctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatg 60  Q
    ||||||||| ||| ||||||||||||||||| ||  |||||||||||||||||    
T  39308725 catctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatg 39308673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 39309675 - 39309731
Alignment:
Q  3 tcaaacatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagat 59  Q
    |||| ||||||||| ||| ||||||||||||||||| ||  ||||||||||||||||    
T  39309675 tcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagat 39309731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 34936771 - 34936716
Alignment:
Q  9 atctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  34936771 atctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatgcact 34936716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 40613827 - 40613863
Alignment:
Q  24 agggataaatggaggcttggtaaatggagcaaagatg 60  Q
    ||||||||||||||||||| |||||||||||||||||    
T  40613827 agggataaatggaggcttgctaaatggagcaaagatg 40613863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 18065775 - 18065720
Alignment:
Q  9 atctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  18065775 atctataaagtaaaaagggataaatggaggtttggtaaatggagcaaagatgcact 18065720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 46294699 - 46294642
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||||||||||  |||||||||||||||| ||| | ||||||||||||||||||||    
T  46294699 acatctatgaagtaaaaagggataaatggagcctttgcaaatggagcaaagatgcact 46294642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 18947345 - 18947287
Alignment:
Q  6 aacatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    ||||||||||||||| || || |||||||||||||   |||||||||||||||||||||    
T  18947345 aacatctatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 18947287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 18948260 - 18948321
Alignment:
Q  3 tcaaacatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    ||||||||| |||||||| || || ||||||| |||||   |||||||||||||||||||||    
T  18948260 tcaaacatccatgaagtgaaatggtataaatgaaggctccctaaatggagcaaagatgcact 18948321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 46295658 - 46295715
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||||| || || ||||||||||||||||  ||| |||||||||||||||| ||||    
T  46295658 acatctataaaatgaaaagggataaatggagcattgataaatggagcaaagattcact 46295715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 41347132 - 41347096
Alignment:
Q  24 agggataaatggaggcttggtaaatggagcaaagatg 60  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  41347132 agggataaatggaggcttgctaaatgaagcaaagatg 41347096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 9483674 - 9483731
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||||||||||| |||||||||||||||  ||| | ||||||||||||||||||||    
T  9483674 acatctatgaagtgaaaagggataaatggaacctttgcaaatggagcaaagatgcact 9483731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 29079300 - 29079348
Alignment:
Q  16 aagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    ||||| |||||  ||||| |||||||| |||||||||||||||||||||    
T  29079300 aagtgaaaaggagtaaattgaggcttgctaaatggagcaaagatgcact 29079348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 41983276 - 41983333
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||| ||||| | |||||||||||| ||| ||||||||||||||||||||||||||    
T  41983276 acatctgtgaagggaaaagggataaattgagccttggtaaatggagcaaagatgcact 41983333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 3497014 - 3497055
Alignment:
Q  130 atagtagcaagactaaatagtttgcatctctaatttcccaaa 171  Q
    |||| |||| |||||||||||||||||||||| |||||||||    
T  3497014 atagcagcaggactaaatagtttgcatctctagtttcccaaa 3497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31139606 - 31139553
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatg 60  Q
    |||| ||||||||| ||| ||||||||||| | |||||||||||| ||||||||    
T  31139606 acatatatgaagtgaaaaaggataaatggatgtttggtaaatggaacaaagatg 31139553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 21071289 - 21071346
Alignment:
Q  7 acatctatgaagtggaaagggataaatggaggcttggtaaatggagcaaagatgcact 64  Q
    |||||||| || || ||||||||||||||||  ||| |||||||||| ||||||||||    
T  21071289 acatctataaaatgaaaagggataaatggagaattgctaaatggagcgaagatgcact 21071346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18526915 - 18526963
Alignment:
Q  8 catctatgaagtggaaagggataaatggaggcttggtaaatggagcaaa 56  Q
    ||||||||| ||| ||||||||||||| ||||||  |||||||||||||    
T  18526915 catctatgaggtgaaaagggataaatgaaggcttcctaaatggagcaaa 18526963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University