View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12861_low_18 (Length: 236)
Name: NF12861_low_18
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 36999090 - 36998888
Alignment:
| Q |
17 |
atagtatacttttgaagaactcttttttcttctttcaatgtgctagttatgggtcacatttgtgttgtttgttcctaacatgtgttgaactaatttatct |
116 |
Q |
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| T |
36999090 |
atagtatacttttgaagaactcttttttcttctttcaatgtgctagttatgggtcacatttgtgttgtttgttcctaacatgtgttgaactaatttatct |
36998991 |
T |
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| Q |
117 |
ccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggca |
216 |
Q |
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| T |
36998990 |
ccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggca |
36998891 |
T |
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| Q |
217 |
gca |
219 |
Q |
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| T |
36998890 |
gca |
36998888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 36994182 - 36994091
Alignment:
| Q |
118 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataa |
209 |
Q |
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| T |
36994182 |
cagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataa |
36994091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 36988407 - 36988346
Alignment:
| Q |
118 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaaga |
179 |
Q |
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| T |
36988407 |
cagacagagaagatgacggcacatgatcctttgcaaaaggagatggcaacccaaaagaaaga |
36988346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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