View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12861_low_2 (Length: 670)

Name: NF12861_low_2
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12861_low_2
NF12861_low_2
[»] chr4 (18 HSPs)
chr4 (32-654)||(251448-252067)
chr4 (44-106)||(5553780-5553842)
chr4 (312-411)||(3749989-3750088)
chr4 (228-284)||(5852254-5852310)
chr4 (312-411)||(5560046-5560145)
chr4 (213-284)||(5570365-5570436)
chr4 (213-285)||(5582574-5582646)
chr4 (228-285)||(5554112-5554169)
chr4 (46-107)||(5885920-5885981)
chr4 (44-108)||(3749523-3749587)
chr4 (213-277)||(5559897-5559961)
chr4 (52-108)||(5847704-5847760)
chr4 (213-285)||(5858952-5859024)
chr4 (213-277)||(5894459-5894523)
chr4 (215-306)||(5538486-5538577)
chr4 (47-113)||(5559583-5559649)
chr4 (240-277)||(3749867-3749904)
chr4 (324-392)||(5554258-5554326)
[»] scaffold0454 (1 HSPs)
scaffold0454 (55-113)||(1018-1076)
[»] chr8 (2 HSPs)
chr8 (55-113)||(1485836-1485894)
chr8 (246-306)||(1486170-1486230)


Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 32 - 654
Target Start/End: Complemental strand, 252067 - 251448
Alignment:
Q  32 tgatagatcgattcacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatgcccttgctttgtagatttgagtt 131  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  252067 tgatagatcgat-cacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatgcccttgctttgtagatttgaggt 251969  T
Q  132 ctcaagtttcagctctcgtcccagtgagtaagaattaatagagatatcaagagttaccaccttttgagtcgagaaatctctattgaaattgttagcagcc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  251968 ctcaagtttcagctctcgtcccagtgagtaagaattaatagagatatcaagagttaccacattttgagtcgagaaatctctattgaaattgttagcagcc 251869  T
Q  232 aaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaattcatcggtagttgattcttcagcaagtgcagcaaacattgctttga 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  251868 aaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaattcatcggtaattgattcttcagcaagtgcagcaaacattgctttga 251769  T
Q  332 ttccacagcttcagtttggtggaactttgaggcttgaatgtgagattgttttttaattggagaggcaatgattgttgatcaaaaagacattttctggagg 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251768 ttccacagcttcagtttggtggaactttgaggcttgaatgtgagattgttttttaattggagaggcaatgattgttgatcaaaaagacattttctggagg 251669  T
Q  432 taaatgaaatttgaatactgatatgcagtaataacatcaattaaaggaaagaaatgaagccaatgtaattctcattgttgtttgtatactctgacacaaa 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |    
T  251668 taaatgaaatttgaatactgatatgcagtaataacatcaattaaaggaaagaaatgaagccaatgtaattctcattgttgtttgtttactctgacac--a 251571  T
Q  532 acaaatggttttataaagttgcatacacattgcatcatctcaaagtaaactttgtcataagtcattgtttgaccataaacttatctctattatgactcac 631  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  251570 acaaatagttttataaagttgcatacacattgcatcatctcaaagtaaactttattataagtcattgtttgaccataaacttatctctattatgactcac 251471  T
Q  632 aaatatgaatgtgagattgtttt 654  Q
    |||||||||||||||||||||||    
T  251470 aaatatgaatgtgagattgtttt 251448  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 5553780 - 5553842
Alignment:
Q  44 tcacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattca 106  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  5553780 tcacagttatacatgctcaactcttgtagttcacacagcggcaacaaagcattgctccattca 5553842  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 411
Target Start/End: Original strand, 3749989 - 3750088
Alignment:
Q  312 tgcagcaaacattgctttgattccacagcttcagtttggtggaactttgaggcttgaatgtgagattgttttttaattggagaggcaatgattgttgatc 411  Q
    |||||||| || |||||| ||||||||  |  |||||||||||||||| | | |||||||||||||||||||||||||| ||   |||||||||||||||    
T  3749989 tgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatgtgagattgttttttaattgaagcaacaatgattgttgatc 3750088  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 5852310 - 5852254
Alignment:
Q  228 agccaaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaa 284  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||    
T  5852310 agccaaattcagtttctggagatgttcgagactgaaaagactacttgaattatcaaa 5852254  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 411
Target Start/End: Original strand, 5560046 - 5560145
Alignment:
Q  312 tgcagcaaacattgctttgattccacagcttcagtttggtggaactttgaggcttgaatgtgagattgttttttaattggagaggcaatgattgttgatc 411  Q
    |||||||| || |||||||||||||||   | ||||||||||||  || ||| ||||||||||||||||||||||||||  |   |||||||||||||||    
T  5560046 tgcagcaagcagtgctttgattccacaatattagtttggtggaatattcaggattgaatgtgagattgttttttaattgatgcaacaatgattgttgatc 5560145  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 5570436 - 5570365
Alignment:
Q  213 attgaaattgttagcagccaaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaa 284  Q
    ||||||||||||| ||||||| |||| |||||| ||||| |||||||  ||||||||||||||||| |||||    
T  5570436 attgaaattgttatcagccaagttcaatttttgaagatgatggagactaaaaagactacttgaattatcaaa 5570365  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 5582646 - 5582574
Alignment:
Q  213 attgaaattgttagcagccaaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaat 285  Q
    ||||||||||||||||||||| |||| |||||| |||||||| ||||  |||||||| |||| ||| ||||||    
T  5582646 attgaaattgttagcagccaagttcaatttttgaagatgttgaagactaaaaagactgcttgcattatcaaat 5582574  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 5554112 - 5554169
Alignment:
Q  228 agccaaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaat 285  Q
    ||||||||||||||| |||||||| | ||||| |||||||||||||||| | ||||||    
T  5554112 agccaaattcagtttctggagatgatcgagactgaaaagactacttgaactatcaaat 5554169  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 5885981 - 5885920
Alignment:
Q  46 acagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcat 107  Q
    ||||||| ||||||||||||||||||  |||| |||||| ||||||||||| | ||||||||    
T  5885981 acagttatacatgctcaactcttgcaagtcacgcagcggtaacaaagcattactccattcat 5885920  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 3749523 - 3749587
Alignment:
Q  44 tcacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatg 108  Q
    ||||||| |||||||||||| |||||||  |||| || ||||||||||||||||| | |||||||    
T  3749523 tcacagtaagacatgctcaattcttgcaagtcacgcaacggcaacaaagcattgctcaattcatg 3749587  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 5559897 - 5559961
Alignment:
Q  213 attgaaattgttagcagccaaattcagtttttggagatgttggagacagaaaagactacttgaat 277  Q
    |||||||| |||| |||||||||||||||| ||||| ||||| | || ||||||||| |||||||    
T  5559897 attgaaatagttatcagccaaattcagtttctggaggtgttgcaaactgaaaagactgcttgaat 5559961  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 5847760 - 5847704
Alignment:
Q  52 agacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatg 108  Q
    |||||||||||||| |||||| |||| ||  |||||||||||||||| |||||||||    
T  5847760 agacatgctcaacttttgcaggtcacgcaaaggcaacaaagcattgctccattcatg 5847704  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 5858952 - 5859024
Alignment:
Q  213 attgaaattgttagcagccaaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaat 285  Q
    |||||||||||||  |||||| |||| ||||||||||||||||||||  || ||||| |||| ||| ||||||    
T  5858952 attgaaattgttaaaagccaagttcactttttggagatgttggagaccaaatagactgcttgtattttcaaat 5859024  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 5894523 - 5894459
Alignment:
Q  213 attgaaattgttagcagccaaattcagtttttggagatgttggagacagaaaagactacttgaat 277  Q
    |||||||||||||  |||||| |||||||||| ||||||| |||||  ||||||||| |||||||    
T  5894523 attgaaattgttataagccaagttcagttttttgagatgtaggagattgaaaagactgcttgaat 5894459  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 5538577 - 5538486
Alignment:
Q  215 tgaaattgttagcagccaaattcagtttttggagatgttggagacagaaaagactacttgaattgtcaaattcatcggtagttgattcttca 306  Q
    ||||||||||||||||||| |||| ||| || |||| ||| ||||  ||||||||||||| ||| |||||| || | ||  |||||||||||    
T  5538577 tgaaattgttagcagccaagttcaatttctgaagattttgaagactaaaaagactacttgtattatcaaatccaccagtgattgattcttca 5538486  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 5559583 - 5559649
Alignment:
Q  47 cagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatgccctt 113  Q
    |||||||||||| |||  ||||  ||| ||| || ||||||||||||||||| ||||||||||||||    
T  5559583 cagttagacatggtcagttcttctagaccacgcaacggcaacaaagcattgctccattcatgccctt 5559649  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 3749867 - 3749904
Alignment:
Q  240 tttttggagatgttggagacagaaaagactacttgaat 277  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  3749867 tttttggagatgttgaagactgaaaagactacttgaat 3749904  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 5554258 - 5554326
Alignment:
Q  324 tgctttgattccacagcttcagtttggtggaactttgaggcttgaatgtgagattgttttttaattgga 392  Q
    ||||||||||||| | | ||||||| ||||||||||  || || |||||||| || |||||||||||||    
T  5554258 tgctttgattccatatcctcagtttagtggaactttttgggttaaatgtgaggttattttttaattgga 5554326  T

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Target: scaffold0454 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 1018 - 1076
Alignment:
Q  55 catgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatgccctt 113  Q
    |||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||| ||||    
T  1018 catgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcatgtcctt 1076  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 1485836 - 1485894
Alignment:
Q  55 catgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcatgccctt 113  Q
    |||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||| ||||    
T  1485836 catgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcatgtcctt 1485894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 1486170 - 1486230
Alignment:
Q  246 gagatgttggagacagaaaagactacttgaattgtcaaattcatcggtagttgattcttca 306  Q
    ||||||||||||||  ||||||||||||||||||| |||| || | ||  |||||||||||    
T  1486170 gagatgttggagactaaaaagactacttgaattgttaaatccaccagtgattgattcttca 1486230  T

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