View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12861_low_4 (Length: 433)
Name: NF12861_low_4
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 35481303 - 35481714
Alignment:
| Q |
1 |
aatccaatcctttaacccaatcttcatttcaatcccaatcttcttcactcaacatatcaccatcattttcagtaggtggcctaacaacaataactacatt |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35481303 |
aatccaatcctttaaccc---cttcatttcaatcccaatcttcttcactcaacatatcaccatcattttcagtaggtggtctaacaacaataactacatt |
35481399 |
T |
|
| Q |
101 |
ccctaaacactcattaacccccatttccttcaaaatcgaacccctttgaacctttaaaccaacatcattaccatcatcttttaccaaataaaacccatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481400 |
ccctaaacactcattaacccccatttccttcaaaatcgaacccctttgaacctttaaaccaacatcattaccatcatcttttaccaaataaaacccatca |
35481499 |
T |
|
| Q |
201 |
tcattctccacctccctcttactcctatcagcaaccaccaaaataggctcttccttacaccacctattattagccttccatggcaaaactctcgcatcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481500 |
tcattctccacctccctcttactcctatcagcaaccaccaaaataggctcttccttacaccacctattattagccttccatggcaaaactctcgcatcca |
35481599 |
T |
|
| Q |
301 |
aaaacgacacaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctctgccaccacaataccaaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35481600 |
aaaacgacacaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctccgccaccacaataccaaa |
35481699 |
T |
|
| Q |
401 |
ctccccttcctttct |
415 |
Q |
| |
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||||||||||||||| |
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| T |
35481700 |
ctccccttcctttct |
35481714 |
T |
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