View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12861_low_6 (Length: 340)
Name: NF12861_low_6
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_low_6 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 17535551 - 17535809
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17535551 |
cccatcagcccttggacaatcatggttgatagatccttagtttcttctataacagccaccataggatcatatttttcaatcaaacaaattaaaattttat |
17535650 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagtactcattcaaactttcattttcttt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17535651 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagtactaattcaaactttcattttcttt |
17535750 |
T |
|
| Q |
272 |
cattttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17535751 |
cattttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg |
17535809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 26407550 - 26407375
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||| || || | ||||||| || | |||||| | |
|
|
| T |
26407550 |
cccatcaacccttgaatagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgt |
26407451 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta |
247 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| || ||||| || |||||||| || | |||||| || ||||| |
|
|
| T |
26407450 |
caacaattctgcgatcttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta |
26407375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 37995 - 38252
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37995 |
cccatcagcccttggaaagtcatggttgatagatccttagtttcttctataacagccaccataggatcatatttttcaatcaagctaattaaaattttat |
38094 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagtactcattcaaactttcattttcttt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagcgagtctattaaagtactcattcaaactttcattttcttt |
38194 |
T |
|
| Q |
272 |
cattttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38195 |
-attttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg |
38252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 27209489 - 27209664
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||| || || | ||||||| || | |||||| | |
|
|
| T |
27209489 |
cccatcaacccttgaatagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgt |
27209588 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta |
247 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| || ||||| || |||||||| || | |||||| || ||||| |
|
|
| T |
27209589 |
caacaattctgcgatcttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta |
27209664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 26901076 - 26901251
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||| || || | ||||||| || | |||||| | |
|
|
| T |
26901076 |
cccatcaacccttgaatagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgt |
26901175 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta |
247 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| || ||||| || |||||||| || | |||||| || ||||| |
|
|
| T |
26901176 |
caacaattctgcgatcttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta |
26901251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 23675664 - 23675489
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||| || || | ||||||| || | |||||| | |
|
|
| T |
23675664 |
cccatcaacccttgaatagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgt |
23675565 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta |
247 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| || ||||| || |||||||| || | |||||| || ||||| |
|
|
| T |
23675564 |
caacaattctgcgatcttctatcgtatcaccatgcgacttcatctgattcaccaactcggagagtctgttgaagta |
23675489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 24047940 - 24047765
Alignment:
| Q |
72 |
cccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttat |
171 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||| || || | ||||||| || | |||||| | |
|
|
| T |
24047940 |
cccatcaacccttgaatagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgt |
24047841 |
T |
|
| Q |
172 |
caacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta |
247 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| || ||||| || |||||||| || | |||||| || ||||| |
|
|
| T |
24047840 |
caacaattctgcgatcttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta |
24047765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University