View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12861_low_8 (Length: 318)
Name: NF12861_low_8
Description: NF12861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12861_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 5015723 - 5016036
Alignment:
| Q |
7 |
ctctggatgtctgaaatcacattatttacctcgtgcagatgttcttaaagcttgactaggatacttacctagctacacttggagaagtgcttatgaagca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5015723 |
ctctggatgtctgaaatcacattatttacctcgtgctgatgttcttaaagcttgactaggatacttacctagctacacttggaaaagtgcttatgaagca |
5015822 |
T |
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| Q |
107 |
ttgtgaggctgcaaatggagagtggataatggtacattttatacacatttgagaggctaatttgttg-ccnnnnnnngcggtggtcgggattcg-acccc |
204 |
Q |
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| T |
5015823 |
ttgtgaggctgcaaatggagagtggataatggtacattttataaacatttgagaggctaatttgttgtcttttttttgcggtggtcggaattcgaacccc |
5015922 |
T |
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| Q |
205 |
aaaccttacatattttatgcatcgtccatactaaattaattgataaatgatattttactgcttatgtggataatgatattttactcacaaggacgctaat |
304 |
Q |
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| T |
5015923 |
aaatcttacctattttatgcatcgtccatactaaattaattgataaatgatattttactgcttatgtggataatgatattttactcacaaggacgctaat |
5016022 |
T |
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| Q |
305 |
ttgttgcctttgct |
318 |
Q |
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| T |
5016023 |
tcgttgcctttgct |
5016036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 3156603 - 3156552
Alignment:
| Q |
185 |
ggtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
235 |
Q |
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| T |
3156603 |
ggtggtcgggattcgaaccccaaatcttacatattttatgcattatccatac |
3156552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 133575 - 133605
Alignment:
| Q |
202 |
cccaaaccttacatattttatgcatcgtcca |
232 |
Q |
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| T |
133575 |
cccaaaccttacatattttatgcatcgtcca |
133605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 49088820 - 49088779
Alignment:
| Q |
185 |
ggtggtcgggattcgaccccaaaccttacatattttatgcat |
226 |
Q |
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| T |
49088820 |
ggtggtcgggattcgaactcaaaccttacatattttatgcat |
49088779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 19126685 - 19126720
Alignment:
| Q |
200 |
accccaaaccttacatattttatgcatcgtccatac |
235 |
Q |
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| T |
19126685 |
accccaaaccttacatattttatgcattgtccatac |
19126720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 8261435 - 8261486
Alignment:
| Q |
185 |
ggtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
235 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
8261435 |
ggtggccgggattcgaaccccaaaccttacatattttatgcattgtctatac |
8261486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 14623493 - 14623527
Alignment:
| Q |
200 |
accccaaaccttacatattttatgcatcgtccata |
234 |
Q |
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| T |
14623493 |
accccaaaccttacatattttatgcattgtccata |
14623527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 7908660 - 7908611
Alignment:
| Q |
187 |
tggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
235 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
7908660 |
tggtcggggttcgaaccccgaaccttacatattttatgcattgtccatac |
7908611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 30397122 - 30397082
Alignment:
| Q |
200 |
accccaaaccttacatattttatgcatcgtccatactaaat |
240 |
Q |
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||||| ||||||||||||||||||||| |||||||| |||| |
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| T |
30397122 |
accccgaaccttacatattttatgcattgtccataccaaat |
30397082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 2613790 - 2613740
Alignment:
| Q |
186 |
gtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
235 |
Q |
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||||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
2613790 |
gtggtcggggttcgaaccccgaaccttacatattttatgcattgtccatac |
2613740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 40735013 - 40735051
Alignment:
| Q |
200 |
accccaaaccttacatattttatgcatcgtccatactaa |
238 |
Q |
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||||| ||||||||||||||||||||| ||||||||||| |
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| T |
40735013 |
accccgaaccttacatattttatgcattgtccatactaa |
40735051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 13958882 - 13958838
Alignment:
| Q |
183 |
gcggtggtcgggattcga-ccccaaaccttacatattttatgcat |
226 |
Q |
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| T |
13958882 |
gcggtgttcgggattcgaaccccaaaccttacatatattatgcat |
13958838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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