View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12862_low_1 (Length: 432)
Name: NF12862_low_1
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12862_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 4091588 - 4091998
Alignment:
| Q |
1 |
aggaggagcagagataggagaaggaatgcttctgtttggaatgtctttgaannnnnnnattcccacttctttacaaagctctgcatctgctatgattata |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091588 |
aggagaagcagagataggagaaggaatgcttctgtttggaatttctttgaattttttaattcccacttctttacaaagctctgcatctgctatgattata |
4091687 |
T |
|
| Q |
101 |
agaggttgtcttcccatatgaaatctgctccatttaacaaatatgaacaatatcatcaacagtaataattattttaatatttgacttacatcaaaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4091688 |
agaggttgtcttcccatatgaaatctgctccatttaacaaatatgaacaatatcatcaacagtaataattattttaatatttgacttgcatcaaaatttt |
4091787 |
T |
|
| Q |
201 |
cttttaaaattgattttgctaatctcattaattattattnnnnnnnntaaagattaatatttgttttaatttagaaaatatcctaaataaaatattaacc |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091788 |
cttttaaaattgattttgctaatctc----attattattaaaaaaaataaagattaatatttgttttaatttagaaaatatcctaaataaaatattaacc |
4091883 |
T |
|
| Q |
301 |
ctagtctcaaacttgcatgtaataacaaatgctagcatccaaatacacaagtagtannnnnnnnccccaagcattatccactaggctagggttcgtagcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4091884 |
ctagtctcaaacttgcatgtaataacaaatgctagcatccaaatacacaagtagta-tttttttccccaagcattatccactaggctagggttcgtagcc |
4091982 |
T |
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| Q |
401 |
atcatgactaggctga |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
4091983 |
atcatgactaggctga |
4091998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 48182435 - 48182321
Alignment:
| Q |
14 |
ataggagaaggaatgcttctgtttggaatgtctttgaannnnnnnattcccacttctttacaaagctctgcatctgctatgattataagaggttgtcttc |
113 |
Q |
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|||||||| ||| |||||||||||||||||||||| || ||||| || |||||||| || ||||||||||||| ||||| || || ||||||| |
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| T |
48182435 |
ataggagagggagtgcttctgtttggaatgtctttaaattttttgattccaacctctttacacagttctgcatctgctactattattagtggctgtcttc |
48182336 |
T |
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| Q |
114 |
ccatatgaaatctgc |
128 |
Q |
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||||||||||||||| |
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| T |
48182335 |
ccatatgaaatctgc |
48182321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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