View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12862_low_2 (Length: 363)
Name: NF12862_low_2
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12862_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 135042 - 134766
Alignment:
| Q |
17 |
cagtcttcaatttttatttgccaacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaa |
116 |
Q |
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| T |
135042 |
cagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaa |
134943 |
T |
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| Q |
117 |
taatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaatgatctccttcatcttctcgcattcaga |
216 |
Q |
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| T |
134942 |
tcttcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaatgatctccttcatcttctggcattcata |
134843 |
T |
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| Q |
217 |
cacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcact |
293 |
Q |
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| T |
134842 |
cacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcact |
134766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 157409 - 157277
Alignment:
| Q |
168 |
taggattgcaattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccgg |
267 |
Q |
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| T |
157409 |
taggattgtaattattcccaatgatctccttcatcttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccag |
157310 |
T |
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| Q |
268 |
aatcacatattccaaatcattgcacttcttgat |
300 |
Q |
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| T |
157309 |
aagaacatattccaaatcattgcagtccttgat |
157277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 46 - 348
Target Start/End: Complemental strand, 34377508 - 34377221
Alignment:
| Q |
46 |
tggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaatttta |
145 |
Q |
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| T |
34377508 |
tggcatctcaacgtagcaatggaaagagctttcactgaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatctta |
34377409 |
T |
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| Q |
146 |
gctttctgttgtacacaatcagtaggattgcaattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggc |
245 |
Q |
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| T |
34377408 |
gctttctgttgtaaacaat---------------tattcccaatgatctccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggc |
34377324 |
T |
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| Q |
246 |
ttgtgaccacggaaacatccggaatcacatattccaaatcattgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgatt |
345 |
Q |
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| T |
34377323 |
ttgtgaccacggaaacatccggaatcacatattccaaatcattgcacttcttgatccttatctcttgtaaatacccgaaccttaaagtttgaccatgatt |
34377224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 176 - 348
Target Start/End: Original strand, 34549987 - 34550159
Alignment:
| Q |
176 |
caattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacat |
275 |
Q |
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| T |
34549987 |
caattattcctaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacat |
34550086 |
T |
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| Q |
276 |
attccaaatcattgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgattttt |
348 |
Q |
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| T |
34550087 |
attccaaatcattgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgattttt |
34550159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 34549866 - 34549933
Alignment:
| Q |
40 |
acattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggctaggaagcttct |
107 |
Q |
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| T |
34549866 |
acattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttct |
34549933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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