View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12862_low_3 (Length: 306)
Name: NF12862_low_3
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12862_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 52492863 - 52492697
Alignment:
| Q |
62 |
cactaaatccaagaaagttcatttttgcttgtcttgctcaactcacaatcaccattacnnnnnnnncttaatatacatgcaattcaactcagcaagagtt |
161 |
Q |
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| T |
52492863 |
cactaaatccaagaaagttcatttttgcttgtcttgctcaactcacaatcaccattacttttttttcttaatatacatgcaattcaactcagcaagagtt |
52492764 |
T |
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| Q |
162 |
tgtaatggctttaaggttcctcaacagcaacaatcgagagaaccgttttcatcaatcatcatatata |
228 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52492763 |
tgtaatggctttaaggttcctcaacaacaacaatcgagagaaccgttttcatcaatcatcatatata |
52492697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 52749473 - 52749308
Alignment:
| Q |
61 |
ccactaaatccaagaaagttcatttttgcttgtcttgctcaactcacaatcaccattacnnnnnnnncttaatatacatgcaattcaactcagcaagagt |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
52749473 |
ccactaaatccaagaaagttcatttttgcttgtcttgctcaactcacaatcaccatta--tttttttcttaatatacatgcaattcaactgagcaagagt |
52749376 |
T |
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| Q |
161 |
ttgtaatggctttaaggttcctcaacagcaacaatcgagagaaccgttttcatcaatcatcatatata |
228 |
Q |
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| T |
52749375 |
ttgtaatggctttaagattcctcaacagcaacaatcgagagaaccgttttcatcaatcatcatatata |
52749308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 51377998 - 51377904
Alignment:
| Q |
135 |
tacatgcaattcaactcagcaagagtttgtaatggctttaaggttcctcaacagcaacaatcgag-agaaccgttttcatcaatcatcatatata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
51377998 |
tacatgcaattcaactcagcaagagtttgtaatggctttaaggttcctcaacagcaacaatcgagaaaaaccgttttcatcaatcatcatatata |
51377904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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