View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12862_low_4 (Length: 293)
Name: NF12862_low_4
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12862_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 36956177 - 36956419
Alignment:
| Q |
16 |
tcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttactct |
115 |
Q |
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||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
36956177 |
tcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaactgaattggtaacttttactct |
36956276 |
T |
|
| Q |
116 |
caaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggca |
215 |
Q |
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|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
36956277 |
caaaattgttgtgccgcttcttggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaacttaattggttggca |
36956376 |
T |
|
| Q |
216 |
aatgtgtttctggttatggctctaatttttgttgcggttgtga |
258 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36956377 |
aatgtgtttctggttatggctctgatttttgttgcggttgtga |
36956419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 36935323 - 36935565
Alignment:
| Q |
16 |
tcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttactct |
115 |
Q |
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|
||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
36935323 |
tcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaactgaattgctgactttacctct |
36935422 |
T |
|
| Q |
116 |
caaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggca |
215 |
Q |
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|||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||| |||||||| | ||||| | |
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| T |
36935423 |
caaaatcgttatgccgcttcttggaatcgctcttattgcattatctttggctttcatggctggtctctacactgttatcagtgaactacgtcggttgtcc |
36935522 |
T |
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| Q |
216 |
aatgtgtttctggttatggctctaatttttgttgcggttgtga |
258 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || ||||||| |
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| T |
36935523 |
aatgtgtttctggttatggcactgatttttgtcgccgttgtga |
36935565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 36948101 - 36948340
Alignment:
| Q |
16 |
tcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttactct |
115 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| || |||| |
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| T |
36948101 |
tcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattggtgaaattctctct |
36948200 |
T |
|
| Q |
116 |
caaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggca |
215 |
Q |
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|
||||| |||||||| | ||||||||||||||||| ||| | ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
36948201 |
gaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggttggca |
36948300 |
T |
|
| Q |
216 |
aatgtgtttctggttatggctctaatttttgttgcggttg |
255 |
Q |
| |
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|||||||||||||||||| | | |||||||||| ||||| |
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| T |
36948301 |
aatgtgtttctggttatgacattgatttttgttgtggttg |
36948340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 37079618 - 37079377
Alignment:
| Q |
16 |
tcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttactct |
115 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||| |||||| || |||||||| ||||||| |||| |
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| T |
37079618 |
tcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaaagcttggaatacctgaattggtgactttctctct |
37079519 |
T |
|
| Q |
116 |
caaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggca |
215 |
Q |
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|
||||| || ||||| || ||||||||||||||| | ||| ||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
37079518 |
gaaaattgtgatgccacttcttggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatcagtgaacttacttggttggca |
37079419 |
T |
|
| Q |
216 |
aatgtgtttctggttatggctctaatttttgttgcggttgtg |
257 |
Q |
| |
|
||||||||||||||| | ||| |||||| |||| ||||||| |
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| T |
37079418 |
aatgtgtttctggttgtagcttcaattttggttgtggttgtg |
37079377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 37069858 - 37069660
Alignment:
| Q |
16 |
tcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttactct |
115 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| ||||||| | || |
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| T |
37069858 |
tcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaaaacttggattaactgaattggtgactttctcact |
37069759 |
T |
|
| Q |
116 |
caaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggc |
214 |
Q |
| |
|
|||||||| |||| || ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
37069758 |
gaaaatcgtgttgccacttcttggaaccgctctcatttctctatctttggctttcatgactggtctctacactgttatcagtgaacttacttggttggc |
37069660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 12493647 - 12493405
Alignment:
| Q |
16 |
tcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttactct |
115 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||| |
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|
| T |
12493647 |
tcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaactgaattggtaacttttactct |
12493548 |
T |
|
| Q |
116 |
caaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggca |
215 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||| || |
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|
| T |
12493547 |
caaaatggtcatgccgcttcttggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaacttacttggttgtca |
12493448 |
T |
|
| Q |
216 |
aatgtgtttctggttatggctctaatttttgttgcggttgtga |
258 |
Q |
| |
|
||||||| |||||||||||| | |||||| |||||||||||| |
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|
| T |
12493447 |
aatgtgtctctggttatggcattgatttttattgcggttgtga |
12493405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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