View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12862_low_5 (Length: 286)
Name: NF12862_low_5
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12862_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 3014787 - 3014519
Alignment:
| Q |
18 |
aacatagtccaaatcatcattaggcttgaccacagataaacgactaggtcgaagactctgcaataacaagatatgttatgagatctgtgacaaagaaaca |
117 |
Q |
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| T |
3014787 |
aacataatccaaatcatcattaggcttgaccacagataaacgactaggtcgaagactctgcaataacaagatatgttatgagatctgcgacgaagaaaca |
3014688 |
T |
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| Q |
118 |
ttgaactataataataactagtggaaaaaaggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaa |
217 |
Q |
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| T |
3014687 |
ttgaactataataataactagttgaaaaaaggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaa |
3014588 |
T |
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| Q |
218 |
tagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaatagaaagaatt |
286 |
Q |
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| T |
3014587 |
tagaaataacatgtccgggattccttcaccgctgaaatatgaaatacaaaaacatgaatagaaagaatt |
3014519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 183119 - 183042
Alignment:
| Q |
198 |
ttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaa |
275 |
Q |
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| T |
183119 |
ttttgggtccactgaaacaatagaaataacatgtctgggattccttcaccattgaaatatcaaatactaaaacatgaa |
183042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 591250 - 591338
Alignment:
| Q |
189 |
atcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
277 |
Q |
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| T |
591250 |
atcatggtcttttgggtccaaccaaacaatagaaataacatgtccgtgattccttcaccactgaaatatcaaatactagaacatcaata |
591338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 40672025 - 40672172
Alignment:
| Q |
116 |
cattgaactataataataactagtggaaaaaaggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaac |
215 |
Q |
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| T |
40672025 |
cattgaataataataataagtggggaaaaaagggctaacctgcacagcttgttgactgtaggtaaacttgtgaataatggtgtattggatccacttaaac |
40672124 |
T |
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| Q |
216 |
aatagaaataacatgtccgggattccttcaccactgaaatatgaaata |
263 |
Q |
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| T |
40672125 |
aatagaaataacatatccgggattccttcaccactgaaatatgaaata |
40672172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 44606488 - 44606401
Alignment:
| Q |
190 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
277 |
Q |
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| T |
44606488 |
tcatggtcttttgggtccacttaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44606401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 44627979 - 44627892
Alignment:
| Q |
190 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
277 |
Q |
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| T |
44627979 |
tcatggtcttttgggtccactgaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44627892 |
T |
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