View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12862_low_6 (Length: 283)
Name: NF12862_low_6
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12862_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 29821447 - 29821193
Alignment:
| Q |
20 |
tgaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgtgtttttgagttttcgaggagaagatacacgcaaagga |
119 |
Q |
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| T |
29821447 |
tgaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcagctaccatgtgtttttgagttttcgaggagaagatacacgcaaagga |
29821348 |
T |
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| Q |
120 |
ttcactgatcatttacgcgctgcccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaattatttcagaaaagctaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29821347 |
ttcactgatcatttacgcgctgcccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaaacatttcagaaaagctaa |
29821248 |
T |
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| Q |
220 |
tcaatgcaataaaagattctatgtttgccatcactattatctcaccagcctatgc |
274 |
Q |
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| T |
29821247 |
tcaatgcaataaaagattctatgtttgccatcactattatctcaccagactatgc |
29821193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 29570883 - 29571137
Alignment:
| Q |
21 |
gaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggat |
120 |
Q |
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| T |
29570883 |
gaagcctcttcttcttcttcttgcagatcaagttcaaccacaagtttatgcacctaccatgtctttttgagttttcgaggagaagatacacgcaaaggat |
29570982 |
T |
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| Q |
121 |
tcactgatcatttacgcgctgcccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaattatttcagaaaagctaat |
220 |
Q |
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| T |
29570983 |
tcaccgatcatttatgtgctgcccttgaaagaaaagggatcacaacttttaaagatgacaaagaccttgagagagggcaagtcatttcagaaaagctaat |
29571082 |
T |
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| Q |
221 |
caatgcaataaaagattctatgtttgccatcactattatctcaccagcctatgct |
275 |
Q |
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| T |
29571083 |
caatgcaataaaagattctatgtttgccatcactattctctcaccagactatgct |
29571137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29830112 - 29829858
Alignment:
| Q |
21 |
gaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggat |
120 |
Q |
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||||| |||||||| ||| | ||||| |||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29830112 |
gaagcctcttcttcttcttcttgcagatcaagttcaaccacaagtttatgcagctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggat |
29830013 |
T |
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| Q |
121 |
tcactgatcatttacgcgctgcccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaattatttcagaaaagctaat |
220 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
29830012 |
tcactgatcatttatgtgctgcccttgaaagaaaagggataacaacttttagagatgacaaagaccttgagagagggcaagtcatttcagaaaagctaat |
29829913 |
T |
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| Q |
221 |
caatgcaataaaagattctatgtttgccatcactattatctcaccagcctatgct |
275 |
Q |
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||||||||| |||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
29829912 |
caatgcaattaaagattctatgtttgccatcactgtcctctcaccagactatgct |
29829858 |
T |
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