View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12862_low_8 (Length: 236)

Name: NF12862_low_8
Description: NF12862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12862_low_8
NF12862_low_8
[»] chr4 (19 HSPs)
chr4 (16-228)||(3270543-3270755)
chr4 (16-221)||(3268331-3268536)
chr4 (16-220)||(12885277-12885481)
chr4 (16-219)||(10985713-10985915)
chr4 (19-221)||(12217561-12217757)
chr4 (16-220)||(21332543-21332746)
chr4 (24-218)||(49402697-49402893)
chr4 (19-220)||(25239695-25239895)
chr4 (19-223)||(45313147-45313349)
chr4 (19-181)||(9901739-9901901)
chr4 (51-220)||(17282489-17282658)
chr4 (96-219)||(16396266-16396389)
chr4 (46-213)||(13861340-13861507)
chr4 (40-210)||(26780824-26780994)
chr4 (24-182)||(8082050-8082207)
chr4 (29-125)||(28891919-28892014)
chr4 (41-162)||(34845514-34845635)
chr4 (45-137)||(15455466-15455558)
chr4 (19-84)||(18284661-18284724)
[»] chr7 (16 HSPs)
chr7 (24-217)||(30770189-30770381)
chr7 (28-221)||(20093545-20093738)
chr7 (16-219)||(21802447-21802650)
chr7 (16-219)||(9548968-9549171)
chr7 (19-219)||(29164849-29165049)
chr7 (29-219)||(7595360-7595549)
chr7 (31-218)||(2249992-2250179)
chr7 (46-219)||(47295681-47295854)
chr7 (17-132)||(22703894-22704009)
chr7 (16-220)||(22705602-22705800)
chr7 (51-220)||(21592876-21593045)
chr7 (46-220)||(18153155-18153329)
chr7 (69-213)||(38612607-38612751)
chr7 (57-220)||(18185662-18185825)
chr7 (25-168)||(28794078-28794220)
chr7 (85-217)||(30764982-30765114)
[»] scaffold0034 (1 HSPs)
scaffold0034 (16-220)||(47414-47618)
[»] chr5 (17 HSPs)
chr5 (16-220)||(5931187-5931391)
chr5 (19-219)||(28068023-28068223)
chr5 (19-212)||(22922645-22922838)
chr5 (25-219)||(42792487-42792681)
chr5 (31-219)||(15620191-15620379)
chr5 (19-219)||(41037645-41037854)
chr5 (19-182)||(38608267-38608430)
chr5 (19-174)||(22922086-22922241)
chr5 (16-220)||(8244508-8244717)
chr5 (46-220)||(23495375-23495549)
chr5 (46-220)||(36712648-36712822)
chr5 (53-220)||(20899595-20899762)
chr5 (46-220)||(5590696-5590870)
chr5 (91-218)||(19329925-19330052)
chr5 (59-220)||(33622489-33622653)
chr5 (140-220)||(22510102-22510182)
chr5 (19-60)||(19330051-19330092)
[»] chr2 (12 HSPs)
chr2 (16-220)||(3770257-3770461)
chr2 (16-217)||(41266197-41266399)
chr2 (16-217)||(23755820-23756021)
chr2 (16-219)||(25133933-25134136)
chr2 (19-212)||(42534129-42534322)
chr2 (19-219)||(23929797-23929997)
chr2 (26-218)||(19092728-19092920)
chr2 (19-212)||(29568315-29568507)
chr2 (19-219)||(3105204-3105404)
chr2 (70-182)||(26155019-26155131)
chr2 (46-220)||(27347196-27347370)
chr2 (16-98)||(26159154-26159236)
[»] scaffold0002 (2 HSPs)
scaffold0002 (19-219)||(391459-391659)
scaffold0002 (24-219)||(380767-380961)
[»] chr8 (18 HSPs)
chr8 (16-220)||(2085741-2085945)
chr8 (16-220)||(18040480-18040683)
chr8 (19-221)||(7999650-7999850)
chr8 (19-220)||(18574016-18574220)
chr8 (19-219)||(24033762-24033965)
chr8 (19-220)||(32009012-32009213)
chr8 (19-219)||(7454666-7454866)
chr8 (25-207)||(10532801-10532983)
chr8 (24-213)||(11709373-11709562)
chr8 (45-182)||(41280846-41280983)
chr8 (24-218)||(24060563-24060757)
chr8 (46-211)||(25820743-25820908)
chr8 (24-121)||(33273604-33273701)
chr8 (82-219)||(22609492-22609631)
chr8 (16-66)||(17775705-17775755)
chr8 (46-101)||(1788677-1788732)
chr8 (143-218)||(33273523-33273598)
chr8 (98-162)||(22282161-22282225)
[»] chr6 (27 HSPs)
chr6 (19-219)||(23574394-23574594)
chr6 (19-218)||(19860052-19860251)
chr6 (26-219)||(18736007-18736200)
chr6 (16-220)||(4409193-4409397)
chr6 (18-220)||(7968493-7968695)
chr6 (19-218)||(14910605-14910805)
chr6 (16-220)||(8306061-8306261)
chr6 (19-218)||(12738495-12738694)
chr6 (16-220)||(15119719-15119921)
chr6 (24-212)||(18014464-18014652)
chr6 (19-219)||(29482591-29482791)
chr6 (24-219)||(18728926-18729121)
chr6 (46-220)||(29095016-29095190)
chr6 (19-220)||(24438560-24438760)
chr6 (19-219)||(18258594-18258794)
chr6 (83-182)||(23524128-23524227)
chr6 (51-182)||(15349665-15349796)
chr6 (16-134)||(18043337-18043455)
chr6 (24-182)||(15319015-15319172)
chr6 (51-182)||(15369661-15369792)
chr6 (77-213)||(3876376-3876512)
chr6 (96-214)||(17757022-17757140)
chr6 (25-160)||(14480001-14480135)
chr6 (141-220)||(21508637-21508716)
chr6 (77-160)||(7099285-7099368)
chr6 (77-160)||(8795262-8795345)
chr6 (51-158)||(6109473-6109583)
[»] scaffold0989 (1 HSPs)
scaffold0989 (16-220)||(1520-1724)
[»] chr1 (10 HSPs)
chr1 (16-220)||(19442109-19442313)
chr1 (16-220)||(19967417-19967621)
chr1 (25-219)||(9858973-9859171)
chr1 (28-213)||(38621812-38621997)
chr1 (19-175)||(8990805-8990961)
chr1 (26-182)||(8995475-8995630)
chr1 (46-182)||(21817775-21817911)
chr1 (19-181)||(24973924-24974085)
chr1 (46-160)||(22186045-22186159)
chr1 (46-123)||(21815619-21815696)
[»] scaffold0058 (2 HSPs)
scaffold0058 (24-220)||(1613-1810)
scaffold0058 (19-171)||(15365-15517)
[»] scaffold0280 (1 HSPs)
scaffold0280 (24-219)||(1040-1235)
[»] scaffold0042 (2 HSPs)
scaffold0042 (19-228)||(74845-75054)
scaffold0042 (35-228)||(68689-68882)
[»] scaffold0150 (1 HSPs)
scaffold0150 (24-220)||(30056-30252)
[»] scaffold0170 (1 HSPs)
scaffold0170 (19-219)||(16315-16516)
[»] chr3 (11 HSPs)
chr3 (19-219)||(22915052-22915252)
chr3 (26-213)||(16853014-16853201)
chr3 (90-220)||(19790346-19790476)
chr3 (19-159)||(16914706-16914846)
chr3 (16-100)||(1998003-1998087)
chr3 (19-94)||(19773386-19773462)
chr3 (25-219)||(3559119-3559311)
chr3 (24-117)||(22006498-22006590)
chr3 (24-117)||(22014015-22014107)
chr3 (95-219)||(44635823-44635947)
chr3 (77-121)||(36639652-36639696)
[»] scaffold0008 (2 HSPs)
scaffold0008 (19-218)||(242673-242872)
scaffold0008 (19-218)||(253313-253512)
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-213)||(4202-4396)
[»] scaffold0026 (1 HSPs)
scaffold0026 (19-211)||(151299-151490)
[»] scaffold0013 (1 HSPs)
scaffold0013 (19-211)||(37234-37425)
[»] scaffold0299 (1 HSPs)
scaffold0299 (16-137)||(19147-19268)
[»] scaffold0192 (1 HSPs)
scaffold0192 (19-182)||(12323-12486)
[»] scaffold0111 (1 HSPs)
scaffold0111 (19-218)||(2831-3029)
[»] scaffold0084 (1 HSPs)
scaffold0084 (52-219)||(54603-54770)
[»] scaffold0362 (1 HSPs)
scaffold0362 (46-220)||(7349-7522)
[»] scaffold0265 (2 HSPs)
scaffold0265 (46-182)||(14898-15034)
scaffold0265 (46-123)||(17113-17190)
[»] scaffold0096 (1 HSPs)
scaffold0096 (54-185)||(10906-11037)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-157)||(86424-86562)
[»] scaffold0011 (1 HSPs)
scaffold0011 (51-161)||(20342-20452)
[»] scaffold0063 (2 HSPs)
scaffold0063 (25-168)||(36830-36972)
scaffold0063 (25-120)||(49325-49419)
[»] scaffold0483 (1 HSPs)
scaffold0483 (128-219)||(9243-9335)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 3270543 - 3270755
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3270543 cagagagagtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatg 3270642  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||||| |||||  ||||||||| |||||||||||| | |||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  3270643 gcacacctggctctggtggttacgaaatcgtgggaagtgtaaccgctagagagtttattgcgggaacgtgtagtgagacgttgtggttcgtttgaaccag 3270742  T
Q  216 tctctgctgctcc 228  Q
    |||||| ||||||    
T  3270743 tctctgttgctcc 3270755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 3268331 - 3268536
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  3268331 cagagagagtgagggtttagagggagagatagattctaccttggagacttccgtgagtcccctatttatagaggtggagggctgcagagccattgtaatg 3268430  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
     |||||||||||||||||||||   |||||||| |||||||||||||| |||||||||||||||||| || || ||||| |||| |||||||||||||||    
T  3268431 acacacctggctctggcggttacgtaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccag 3268530  T
Q  216 tctctg 221  Q
    ||||||    
T  3268531 tctctg 3268536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 12885277 - 12885481
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||||  |||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  12885277 cagagagggtgagggtttagaggaagagatagattctaccttggggactgttgtgagtcccctatttataaaggtggagggctgcagagccattgtaatg 12885376  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||| || |  ||||| |||| |||||||||||||||    
T  12885377 gcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcaaagagacgttgtggttcgtttgaaccag 12885476  T
Q  216 tctct 220  Q
    |||||    
T  12885477 tctct 12885481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 10985915 - 10985713
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||||||| |||| |||| ||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  10985915 cagagagagtgagggtttggaggaagaggtagattctaccttggg-actgccgtgagtcccctatttatagaggtggatggctgcagagccgttgtaatg 10985817  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||| |||||||||||||||||| || || ||||| |||| |||||||||||||||    
T  10985816 gcacacctggctctcgcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccag 10985717  T
Q  216 tctc 219  Q
    ||||    
T  10985716 tctc 10985713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 12217561 - 12217757
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||         
T  12217561 agagagtgcgggtttagagggagagatagattctaccttggggactgtcgtgagtcccctatttatagaggtggagggctgcagagccgttgtaa----- 12217655  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
     ||||||||||||||||||  ||||||| | |||||||||||||| |||||||||||| ||||| || || ||||| |||| ||||||||||||||||||    
T  12217656 -acctggctctggcggttacgaaatcgtaggaagtgtaaccgccagagagtttattgcaggaacgtgcagagagacgttgtggttcgtttgaaccagtct 12217754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 21332746 - 21332543
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||||||| |||| |||||||||| |||||||||  |||||  ||||||| ||||||| |||||||||||||||||||||||||||| ||    
T  21332746 cagagagagtgagggttt-gaggaagagatagattctaccttggaaactgctttgagtcccctatttacagaggtggagggctgcagagccgttgtagtg 21332648  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||||||| |||  ||||| ||| |||| ||||||||| | ||||||||| |||||| ||||| ||||| |||| |||||||||||||||    
T  21332647 gcacacctggctctggcgcttacgaaatcatgggaagtataaccgccagaaagtttattgtgggaacgtgtagagagacgttgtggttcgtttgaaccag 21332548  T
Q  216 tctct 220  Q
    |||||    
T  21332547 tctct 21332543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 49402697 - 49402893
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||| | ||||||||| ||| || |||| |||||||||||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||     
T  49402697 gtgagggataagagggagatatatattctactttggggactgctatgagtcccctatatatagaggtggagggctgcagagccgttgtaatggcacacca 49402796  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatg--tagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||||||||||||||  | |||||||||||||||||||||| |||| ||||||||| ||| ||   || ||||| ||||||| |||||||||| ||||    
T  49402797 ggctctggcggttacgagatcgtggaaagtgtaaccgccatagagattattgcggaaacgtgcagagagagacgttgtagtccgtttgaaccggtct 49402893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 25239695 - 25239895
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||||||||| ||| || ||| |||| ||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25239695 agagagtgagggttt-gagagaaagaaagattctaccttggggactgcatttagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 25239793  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||  ||||| ||||||  |||| |||| |||||||||||||   ||||||||||||||||| || |  ||||| |||  ||||||||||||||||||    
T  25239794 caccttactctgacggttacgaaattgtgggaagtgtaaccgcctgtgagtttattgcgggaacgtggaaagagactttggggttcgtttgaaccagtct 25239893  T
Q  219 ct 220  Q
    ||    
T  25239894 ct 25239895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 45313147 - 45313349
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||||||||||| |  |||| ||||| |||||||||||||||   ||||| | || | ||||||||| ||||| |||| | ||||||||||||||    
T  45313147 agagagtgagggtttagtgaaagagttagattctaccttggggactgttatgagttccct-tatatagaggtagagggttgcaaatccgttgtaatggca 45313245  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||| ||||||||||||||  ||||||||| |||||||||||||| |||| |||||| |||||| || || ||||| |||||||||||||||||||||||    
T  45313246 caccaggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagattattg-gggaacgtgcagagagacgttgtagttcgtttgaaccagtct 45313344  T
Q  219 ctgct 223  Q
     ||||    
T  45313345 ttgct 45313349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 9901901 - 9901739
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||| ||||||||| || | | |||||||| |||||||   |||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  9901901 agagagtgagggttaagagggagatatcggttctaccttgaggactgctaagagtcccctatatatagaggtggagggttgcagagccgttgtaatggca 9901802  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaa 181  Q
    |||||||||||| ||||||  ||||||||| | |||||||||| | |||| ||||||||||||    
T  9901801 cacctggctctgacggttacgaaatcgtgggacgtgtaaccgctagagagattattgcgggaa 9901739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 17282658 - 17282489
Alignment:
Q  51 ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaa 150  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  || |||||| |    
T  17282658 ctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacaccttactctgacggttacgaattcgtggga 17282559  T
Q  151 agtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||||||||    | ||||||||||||||| || |  ||||| |||  ||||||| ||||||||||||    
T  17282558 agtgtaaccgcttgtgggtttattgcgggaacgtggaaagagacgttggggttcgttagaaccagtctct 17282489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 16396389 - 16396266
Alignment:
Q  96 gctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagaca 195  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| ||||| ||| |||||||||||||| || ||||||||||||||| ||||| |||||     
T  16396389 gctgcagagccgttgtagtggcacacctgactctggcgattaggaaatcatgggaagtgtaaccgccagagtgtttattgcgggaacgtgtagagagacg 16396290  T
Q  196 ttgtagttcgtttgaaccagtctc 219  Q
    |||| ||||| |||||||||||||    
T  16396289 ttgtggttcgcttgaaccagtctc 16396266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 13861340 - 13861507
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||  ||||  | ||||  ||||||    
T  13861340 agattctaccttggggactgcattgagttccctatttatagaggtggagggctgcaaagccgttgtaatggcacaccttactctaacagttacgaaatcg 13861439  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
    ||| ||||||||| |||   ||||||||||||||||| || |  ||||| |||  |||||||||||||    
T  13861440 tgggaagtgtaactgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaacc 13861507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 26780994 - 26780824
Alignment:
Q  40 agagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagc 139  Q
    |||| ||||| |||||||||||||||   ||| ||| ||||  | ||||||||||||||||||||||||||||||| |||||| | |||||| |||||      
T  26780994 agagttagattctaccttggggactgttatgactcccctatacagagaggtggagggctgcagagccgttgtaatgacacaccagactctggtggttacg 26780895  T
Q  140 aaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttga 210  Q
    ||| ||||| |||||||||||||| |||| ||||||||||||| || || || || |||| ||||||||||    
T  26780894 aaaacgtgggaagtgtaaccgccagagagattattgcgggaacgtgcagagaaacgttgtggttcgtttga 26780824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 8082050 - 8082207
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||  |||| ||||| |||| |||||||||||   |||||| |||| |||||||||||||| |||||||||| ||||||||||||||||    
T  8082050 gtgagggtttagagaaagag-tagattctacattggggactgctaagagtcccctatatatagaggtggaggactgcagagccattgtaatggcacacct 8082148  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    || ||   | ||||  |||||||||||||||||||||||| |||  | |||||||||||    
T  8082149 gggtccaacagttacgaaatcgtggaaagtgtaaccgccagagaaataattgcgggaac 8082207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 28891919 - 28892014
Alignment:
Q  29 ggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctgg 125  Q
    |||||||||| ||| |||||| ||||||||||||||     |||||| |||| ||||||||||||| |||||| |||||||||||||||||| ||||    
T  28891919 ggtttagaggaaga-atagattctaccttggggactcttaagagtcccctatatatagaggtggagagctgcatagccgttgtaatggcacatctgg 28892014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 34845635 - 34845514
Alignment:
Q  41 gagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagca 140  Q
    |||| |||| ||||||||||||||||   ||| || || | |||||||||||  |  ||||||| |||||||||||||||| ||  |||| ||||||  |    
T  34845635 gagagagattctaccttggggactgcgaggagccccctttatatagaggtgggtgaatgcagagtcgttgtaatggcacacatgtgtctgacggttacga 34845536  T
Q  141 aatcgtggaaagtgtaaccgcc 162  Q
    |||||||| |||||||||||||    
T  34845535 aatcgtgggaagtgtaaccgcc 34845514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 15455466 - 15455558
Alignment:
Q  45 tagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggtta 137  Q
    ||||| ||||||||||||||||   ||||| | ||| ||||||||||||||| |||| || |||||| | ||||||||||  | |||||||||    
T  15455466 tagattctaccttggggactgctaagagtcttatatatatagaggtggagggatgcaaagtcgttgtgaaggcacacctgtgtttggcggtta 15455558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 18284724 - 18284661
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttat 84  Q
    |||| ||||||||||||||| |||||  ||| ||||||||||||||||  ||||||| ||||||||    
T  18284724 agagagtgagggtttagaggaagaga--gattctaccttggggactgcattgagtcccctatttat 18284661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 30770381 - 30770189
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  30770381 gtgagggtttagaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggtggagtgctgcagagccgttgtaatggcacacct 30770282  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtc 217  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||    
T  30770281 ggctctggcggttacgaaatcgtggaaagtgtaactgccaaagagtttattgcgggaacgtgtagagagacgttgt-gttcgtttgaaccagtc 30770189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 20093545 - 20093738
Alignment:
Q  28 gggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggct 127  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20093545 gggtttggagggagagatagtttctaccttggggactgccgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctggcc 20093644  T
Q  128 ctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctctg 221  Q
    || |||||||  ||||||||| |||||||||| |||||||| ||||||||||||  || || ||||| |||| |||||||||||||||||||||    
T  20093645 ctagcggttacgaaatcgtgggaagtgtaaccaccaaagagcttattgcgggaatgtgcagagagacgttgtggttcgtttgaaccagtctctg 20093738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 21802447 - 21802650
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  21802447 cagagagagtgagggtttagaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggttgagggctacagagccgttgtaatg 21802546  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||||| |||||  ||||||| | ||||||||| || | ||||||||||||| |||| || || ||||| |||| |||||| ||||||||    
T  21802547 gcacacctggctctggtggttacgaaatcgtaggaagtgtaacagcgagagagtttattgcgagaacctgcagagagacgttgtggttcgtctgaaccag 21802646  T
Q  216 tctc 219  Q
    ||||    
T  21802647 tctc 21802650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 9549171 - 9548968
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| ||||||||||  ||||||||||||| |  ||||||| || |||||| ||||||||||||||||||||||||||  |    
T  9549171 cagagagagtgagggtttagaggaagagatagattttaccttggggactactttgagtcccctttttataaaggtggagggctgcagagccgttgtagag 9549072  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||| |||||||||||||||||| || || ||||| ||||  ||||||||||||||    
T  9549071 gcacacctggctctagcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtgtttcgtttgaaccag 9548972  T
Q  216 tctc 219  Q
    ||||    
T  9548971 tctc 9548968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 29164849 - 29165049
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  29164849 agagagtgagggtttagaggaagagatagattctaccttggggactgctatgagtcccctatttatagaggtggacggctgcagagccgttgtaatgaca 29164948  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||| |||| |  ||||  ||||||||| ||||||||| || | |||||||||||||||||| || || ||||| |||| ||||||||||||||||||    
T  29164949 cacctgactctagaagttacgaaatcgtgggaagtgtaactgctagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccagtct 29165048  T
Q  219 c 219  Q
    |    
T  29165049 c 29165049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 7595360 - 7595549
Alignment:
Q  29 ggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctc 128  Q
    |||||| ||| |||||||||| ||||||||||  ||| | ||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |    
T  7595360 ggtttaaaggaagagatagattctaccttgggt-ctgtcatgattcccctatttatagaggtggagggctgcaaagccgttgtaatagcacacctggcgc 7595458  T
Q  129 tggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    |||  ||||  ||||||||| |||||||||||||| |||||||||||||||||| || || |||||||||| ||||||||||||| |||||    
T  7595459 tggatgttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacattgtggttcgtttgaaccggtctc 7595549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 2250179 - 2249992
Alignment:
Q  31 tttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctg 130  Q
    |||||||| |||||||||| |||| ||||||  |||  ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  2250179 tttagaggaagagatagattctacattggggtttgctatgagtcccctatatatagaggtggagggttgcagagccgttgtaatggcacaccaggctttg 2250080  T
Q  131 gcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||  ||||||||| || ||||||||| | |||  ||||||||||||| || || ||||| |||| ||||||||||||||||||    
T  2250079 gcggttacaaaatcgtgggaattgtaaccgctagagatattattgcgggaacgtgcagagagacgttgtggttcgtttgaaccagtct 2249992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 47295854 - 47295681
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||    
T  47295854 agattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacaccttactctgacggttacgaaatcg 47295755  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    ||| |||||||| |||    ||||||||||||||||  || || ||||| |||  |||||||||||||||||||    
T  47295754 tgggaagtgtaaacgcttgtgagtttattgcgggaaggtggagagagacgttggggttcgtttgaaccagtctc 47295681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 22703894 - 22704009
Alignment:
Q  17 agagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatgg 116  Q
    |||||| |||||||||||||||  ||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  22703894 agagagagtgagggtttagaggacgagatagattctaccttggggactgctgtgagtcccatatttatagaggtggagggctgcagagccgttgtaatgg 22703993  T
Q  117 cacacctggctctggc 132  Q
    ||||||||| ||||||    
T  22703994 cacacctggttctggc 22704009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 22705602 - 22705800
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||        ||||||||  |||||||||||||||||| |||||||||| ||||||||    
T  22705602 cagagagagtgagggtttagaggaagagatagattctaccttggtt------gtgagtcccgtatttatagaggtggaggactgcagagccattgtaatg 22705695  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||  | ||| |||||||| ||||| || || || || |||| |||||||||||| ||    
T  22705696 gcacacctggctctggcggttacgaaatcatgggaagtgtaaccggtagagaatttattgcaggaacgtgcagagaaacgttgtggttcgtttgaactag 22705795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 21593045 - 21592876
Alignment:
Q  51 ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaa 150  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||  ||||||||| |    
T  21593045 ctaccttggggactgcattgagtcccctatttatagaggtggagggctgctgagccgttgtaatggcacaccttactctgacggttacaaaatcgtggga 21592946  T
Q  151 agtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||||||| |    || ||||| ||||||| || |  ||||| |||  ||||||||||||||||||||    
T  21592945 agtgtaaccgtctgttagcttattacgggaacgtggaaagagacgttggggttcgtttgaaccagtctct 21592876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 18153155 - 18153329
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| |||||||||||| |||  ||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||  ||||| ||||||  |||| |    
T  18153155 agattctaccttggggaatgcattgagtcccctatttatagaggtggagggctgccgagtcgttgtaatggcacagcttactctgacggttacgaaatgg 18153254  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||| |||||||||||||   |||||||||| |||||| || |  ||||| |||  ||||||||||||||||||||    
T  18153255 tgggaagtgtaaccgcctgcgagtttattgtgggaacgtggaaagagacgttggggttcgtttgaaccagtctct 18153329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 38612607 - 38612751
Alignment:
Q  69 tgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagag 168  Q
    |||||| | ||| |||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||  ||||||||| ||||||||| |||| ||||    
T  38612607 tgagtcatatatatatagaggtggagatctgcagagccgttgtaatggtacaccaggctctggcggttacaaaatcgtgggaagtgtaactgccagagag 38612706  T
Q  169 tttattgcgggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
     |||||| |||||| || || | ||| |||| |||||||||||||    
T  38612707 attattgtgggaacgtgcagagggacgttgtggttcgtttgaacc 38612751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 18185662 - 18185825
Alignment:
Q  57 tggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgta 156  Q
    ||||||||||  ||||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||  ||||| ||||||  |||||| || |||||||    
T  18185662 tggggactgcattgagtcccctattaataaatgtggagggctgcagagccgttttaacggcacaccttactctgacggttacgaaatcgcgggaagtgta 18185761  T
Q  157 accgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||    |||||||||||||||||||| |  ||||| |||  ||||||||||||||||||||    
T  18185762 accgcttgcgagtttattgcgggaacatggaaagagacgttggggttcgtttgaaccagtctct 18185825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 28794220 - 28794078
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 124  Q
    |||||||||||||||||| |||||| |||||||||||||||    |||||| |||| |||| |||||   ||||||| ||||||||||||||||||| ||    
T  28794220 tgagggtttagagggaga-atagattctaccttggggactgttaagagtcccctatatataaaggtgagtggctgcatagccgttgtaatggcacacgtg 28794122  T
Q  125 gctctggcggttagcaaatcgtggaaagtgtaaccgccaaagag 168  Q
      |||| ||||||  ||||||||| |||||||||||||| ||||    
T  28794121 tgtctgacggttacgaaatcgtgggaagtgtaaccgccagagag 28794078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 30765114 - 30764982
Alignment:
Q  85 agaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacat 184  Q
    ||||||||||||||||||||| |||||| |||||||||| | || | ||| ||  ||||||||| |||||||||||||| |||  | ||||||||||  |    
T  30765114 agaggtggagggctgcagagctgttgtagtggcacacctaggtccgacgggtacgaaatcgtgggaagtgtaaccgccagagaaataattgcgggaatgt 30765015  T
Q  185 gtagtgagacattgtagttcgtttgaaccagtc 217  Q
    | |  |||||||||| ||||| |||||||||||    
T  30765014 gcaaagagacattgtggttcgcttgaaccagtc 30764982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 47618 - 47414
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  47618 cagagagagtgagggtttagaggaagagatagattctaccttggggactgctttgagtcccctatttatagaggtggagggctgcagagccgttgtaatg 47519  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||| |||||||||||||||  |||| |||| |||||||||||||| |||||||||||||||||| || || ||||| |||| |||||||||||||||    
T  47518 gcacacttggctctggcggttacaaaattgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccag 47419  T
Q  216 tctct 220  Q
    |||||    
T  47418 tctct 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 5931187 - 5931391
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5931187 cagagagagtgagggtttagagggagagatagattctatcttggggactgtcgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatg 5931286  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
     ||||||||| |||||||||||  ||||||||| ||||| |||||||| |||||||||||||||||  ||||| ||||| |||| |||||||||||||||    
T  5931287 acacacctggttctggcggttatgaaatcgtgggaagtgcaaccgccagagagtttattgcgggaatgtgtagagagacgttgtggttcgtttgaaccag 5931386  T
Q  216 tctct 220  Q
    |||||    
T  5931387 tctct 5931391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 28068223 - 28068023
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| ||||| |||| ||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28068223 agagagtgagggtttagaggaagagagagattctaccttagggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 28068124  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||  ||||||||| |||||||||||||  |||||||||||| ||||| || || ||||| |||  | ||||||||||||||||    
T  28068123 cacctggctctggcggttacgaaatcgtgggaagtgtaaccgccggagagtttattgcaggaacgtgcagagagacgttgaggctcgtttgaaccagtct 28068024  T
Q  219 c 219  Q
    |    
T  28068023 c 28068023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 22922838 - 22922645
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| |||||||||||| ||   ||||||| |||||||||||||||||||||| ||||||||||||| || ||    
T  22922838 agagagtgagggtttagaggaagagatagattctaccttggggattgttatgagtcccctatttatagaggtggagggctacagagccgttgtagtgaca 22922739  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaac 212  Q
    ||||||||||| |||||||  ||||||||| |||||||||||||| |||||||||||| | |||||  || ||||  |||| ||||||||||||    
T  22922738 cacctggctctagcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgctgaaacatacagagagaggttgtggttcgtttgaac 22922645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 42792487 - 42792681
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 124  Q
    ||||||||||||| | ||||||||| |||||||||||| ||   ||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  42792487 tgagggtttagagagggagatagattctaccttggggattgttatgagtcccctagttatagaggtggagggctgcagagcagttgtagtggcacacctg 42792586  T
Q  125 gctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    |||||||||||||  ||||||||| |||||||||||| | |||||||||||||||||| || || || || ||||   ||||||||||| |||||    
T  42792587 gctctggcggttacgaaatcgtgggaagtgtaaccgctagagagtttattgcgggaacgtgcagagatacgttgtgactcgtttgaaccggtctc 42792681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 15620379 - 15620191
Alignment:
Q  31 tttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctg 130  Q
    |||| ||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||    
T  15620379 tttataggaagagatagattctaccttggggactgctatgagtcccctatttatagaggtgaagggctgtagagctgttgtaatggcacacttggctctg 15620280  T
Q  131 gcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
     ||||||  |||| |||| |||||||||||||| ||||||||||| |||||| || || ||||| |||| | ||||||||||| |||||    
T  15620279 acggttacgaaattgtgggaagtgtaaccgccagagagtttattgtgggaacgtgcagagagacgttgtggctcgtttgaacccgtctc 15620191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 41037854 - 41037645
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttataga---------ggtggagggctgcagagccgtt 109  Q
    |||| ||||||||||||||| ||||||| || ||||||||||||||||  ||||||| |||||||||||         ||||||||||||| ||||||||    
T  41037854 agagagtgagggtttagaggaagagatatattctaccttggggactgctatgagtcccctatttatagaatttatagaggtggagggctgcggagccgtt 41037755  T
Q  110 gtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttg 209  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||| |||| || ||  |||  || | |||| ||||    
T  41037754 gtaatggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgtgaacgtgcagacagatgttatcgttcatttg 41037655  T
Q  210 aaccagtctc 219  Q
    ||||||||||    
T  41037654 aaccagtctc 41037645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 38608267 - 38608430
Alignment:
Q  19 agagcgtgagggttt-agagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    |||| |||||||||| ||||||||| | |||| ||||||| ||||||||  ||||||| ||||||||||||||||||| || ||||||||||||   |||    
T  38608267 agagagtgagggttttagagggagaaa-agattctaccttagggactgcattgagtcccctatttatagaggtggaggtctacagagccgttgtggaggc 38608365  T
Q  118 acacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  38608366 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgccaaagagtttattgcgggaac 38608430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 22922241 - 22922086
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| |||||||||| ||||   ||||||| |||||||||||||||||||||| ||||||||||||| || ||    
T  22922241 agagagtgagggtttagaggaagagatagattctaccttgggaactgttatgagtcccctatttatagaggtggagggctacagagccgttgtagtgaca 22922142  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttatt 174  Q
    ||||||||||||| |||||  ||||||||| |||||||||||||| | ||||||||    
T  22922141 cacctggctctggtggttacaaaatcgtgggaagtgtaaccgccagaaagtttatt 22922086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 8244508 - 8244717
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||||||| |||| |||||||||| |||||||| ||||||  ||||||||  ||||||||||||||||||||||||||| || ||| |||    
T  8244508 cagagagagtgagggttttgaggaagagatagattctaccttgaggactgatgtgagtcccttatttatagaggtggagggctgcagagtcg-tgtgatg 8244606  T
Q  116 gcac------acctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttg 209  Q
    ||||      || |||||||||||||||  |||||||||||||||||| ||| | ||||||||||| |||||| || |  ||||| |||| |||||||||    
T  8244607 gcacatcattacatggctctggcggttacgaaatcgtggaaagtgtaatcgctagagagtttattgggggaacgtgcaaagagacgttgtggttcgtttg 8244706  T
Q  210 aaccagtctct 220  Q
    |||||||||||    
T  8244707 aaccagtctct 8244717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 23495375 - 23495549
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| |||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||    
T  23495375 agattctacattggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctaactctgacggttacgaaatcg 23495474  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||| ||||||||||| |   ||||||||||||||||| || |  ||||| |||  ||||||||||||| ||||||    
T  23495475 tgggaagtgtaaccgtctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccggtctct 23495549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 36712822 - 36712648
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||    
T  36712822 agattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctaactctgacggttacgaaatcg 36712723  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||||||||||| ||   || ||||||||| |||| || |  ||||| |||  |||||||||||| |||||||    
T  36712722 tggaaagtgtaaccacctgcgattttattgcgagaacgtggaaagagacgttggggttcgtttgaactagtctct 36712648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 20899762 - 20899595
Alignment:
Q  53 accttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaag 152  Q
    ||||||||||||||  ||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||  ||||| ||||||  ||||||||| |||    
T  20899762 accttggggactgcattgagtcccctatttataaaggtggagggctgcagattcgttgtaatggcacacctaactctgacggttacgaaatcgtgggaag 20899663  T
Q  153 tgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||||||||||   ||||||||||||||||| || |  ||||| |||  ||||||||||||||||||||    
T  20899662 tgtaaccgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccagtctct 20899595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 5590870 - 5590696
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||  |||| |    
T  5590870 agattctaccttggggactgcattgaatcccctatttatagaggtggagggcagcagagccgttgtaatggcacaccttactctgacggttacgaaattg 5590771  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||| |||||||||||||   ||||||||||||||||  || |  ||||| |||  ||||||||||||||||||||    
T  5590770 tgggaagtgtaaccgcctgcgagtttattgcgggaatgtggaaagagacgttggggttcgtttgaaccagtctct 5590696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 19330052 - 19329925
Alignment:
Q  91 ggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtg 190  Q
    |||||||| ||||||| |||||||||||||||  |||||||||||||  ||||||||| |||||||||||||| |||| |||||||||||||||| || |    
T  19330052 ggagggctacagagccattgtaatggcacaccaagctctggcggttacgaaatcgtgggaagtgtaaccgccagagagattattgcgggaacatgcagag 19329953  T
Q  191 agacattgtagttcgtttgaaccagtct 218  Q
      || |||| | ||||||||||| ||||    
T  19329952 taacgttgtggctcgtttgaaccggtct 19329925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 33622653 - 33622489
Alignment:
Q  59 gggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctct---ggcggttagcaaatcgtggaaagtgt 155  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||  ||||   || |||||  ||||| ||| ||||||    
T  33622653 gggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaattacacaccttactctgacggtggttacgaaatcctgggaagtgt 33622554  T
Q  156 aaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||||   ||||||||||| ||||| |  |  ||||| |||  |||||||| |||||||||||    
T  33622553 aaccgcctgtgagtttattgctggaacgtagaaagagacgttggggttcgtttaaaccagtctct 33622489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 22510102 - 22510182
Alignment:
Q  140 aaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||||||||| |||||||||||||   |||||||||||||||||||| |  ||||| ||| ||||||||| |||||||||||    
T  22510102 aaatcgtgggaagtgtaaccgcctgtgagtttattgcgggaacatggaaagagacgttggagttcgttttaaccagtctct 22510182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 19330092 - 19330051
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggg 60  Q
    |||| ||||||||||||||| |||||||||| ||||||||||    
T  19330092 agagagtgagggtttagaggaagagatagattctaccttggg 19330051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 3770257 - 3770461
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||| ||| |||||||||| |||||||||||||||  |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  3770257 cagagagagtgagggtttaaaggaagagatagattctaccttggggactgttgtgaatcccctatttatagaggtggagggctgcagagccgttgtaatg 3770356  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| ||| || || ||||| |||  |||||||||||||||    
T  3770357 gcacacctggctctggcggttacaaaatcgtggaaagtgtaaccgctagagagtttattgcggaaacgtgcagagagacgttgaggttcgtttgaaccag 3770456  T
Q  216 tctct 220  Q
    |||||    
T  3770457 tctct 3770461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 41266399 - 41266197
Alignment:
Q  16 cagagagcgtgagggttt-agagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaat 114  Q
    ||||||| |||||||||| ||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  41266399 cagagagagtgagggttttagaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggtggagggctgcagagccgttgtaat 41266300  T
Q  115 ggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaacca 214  Q
    |||||||||||||||||||||||  | ||||||  |||||||||||||  |||||||||||||||||| || || ||||| |||| ||||||||||||||    
T  41266299 ggcacacctggctctggcggttacgatatcgtgagaagtgtaaccgcccgagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacca 41266200  T
Q  215 gtc 217  Q
    |||    
T  41266199 gtc 41266197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 23756021 - 23755820
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||||  |||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  23756021 cagagagagtgagggtttagaggaagagatagattctaccttggggactgttgtgagtcccctatttatagaggtggaaggctgtagagccgttgtaatg 23755922  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||| |||||||||||||||||| || || ||||| |||| |||| ||||||||||    
T  23755921 gcacacctggctctagcggttacgaaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcttttgaaccag 23755822  T
Q  216 tc 217  Q
    ||    
T  23755821 tc 23755820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 25134136 - 25133933
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    |||||||  ||| |||||||||| |||||||||| ||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||    
T  25134136 cagagagaatgatggtttagaggaagagatagattctaccttagggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtagtg 25134037  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||| || |  ||||| |||| |||||||||||||||    
T  25134036 gcacacctggctctggcggttacgaaatcgtggtaagtgtaaccgccagagagtttattgcgggaacgtgcaaagagacgttgtggttcgtttgaaccag 25133937  T
Q  216 tctc 219  Q
    ||||    
T  25133936 tctc 25133933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 42534322 - 42534129
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||||||||||| ||  ||| ||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42534322 agagagtgagggtttagcggaggagttagattctaccttggggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 42534223  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaac 212  Q
    || ||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||| || || ||||| |||| | ||||||||||    
T  42534222 catctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggctcgtttgaac 42534129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 23929797 - 23929997
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||| |||||  ||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||    
T  23929797 agagagtgagggtttagaggaagagttagattttaccttggggactgcagtgagtcccctatataaagaggtggagggctgcagagccgttgtaatggca 23929896  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||   |||||||| |||||||||||||  ||||||||||| |||||| || || |||||||||| |||| |||||||| ||||    
T  23929897 cacctggctctggcggttacggaatcgtgggaagtgtaaccgccggagagtttattgtgggaacgtgcagagagacattgtggttcatttgaaccggtct 23929996  T
Q  219 c 219  Q
    |    
T  23929997 c 23929997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 19092728 - 19092920
Alignment:
Q  26 gagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctgg 125  Q
    ||||||||||||| ||||||| |||||||||||||||||||  ||||||| |||| ||||||||||| |||||||||||||||||||||| |||||| |     
T  19092728 gagggtttagaggaagagataaatcctaccttggggactgctatgagtcccctatatatagaggtggggggctgcagagccgttgtaatgacacaccaga 19092827  T
Q  126 ctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||| ||||||   || | |||| |||||||||||||| |||| ||||||||||||| || || ||||| |||| |||||||||||| |||||    
T  19092828 ctctcgcggtttcgaacttgtgggaagtgtaaccgccagagagattattgcgggaacgtgcagagagacgttgtggttcgtttgaactagtct 19092920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 29568315 - 29568507
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| ||| |||||| ||| ||||| |  |||  ||||||| | |||||||||||||||||||| ||||||||||||||||| |    
T  29568315 agagagtgagggtttagaggaagacatagattctaacttggcggttgctatgagtccccaatttatagaggtggagggctacagagccgttgtaatggta 29568414  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaac 212  Q
    |||||||||||||||||||  ||||||||| |||||||||||| | |||||||||||| ||||| ||||| ||||| |||| | ||||||||||    
T  29568415 cacctggctctggcggttacgaaatcgtgggaagtgtaaccgctagagagtttattgc-ggaacgtgtagagagacgttgtggctcgtttgaac 29568507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 3105204 - 3105404
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||||| |||||||| |||| ||||| ||||||||||||||||  |||||||  ||||||||||||||||||  || ||||||||||||||| ||    
T  3105204 agagagtgaggttttagaggaagagttagattctaccttggggactgctatgagtcccatatttatagaggtggaggattgtagagccgttgtaatgaca 3105303  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||  ||||   |||||  ||||||||| |||||||||||||| |||||||||||||||||| || || ||||| |||| | ||||||||||| ||||    
T  3105304 cacctaactctcatggttatgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggctcgtttgaaccggtct 3105403  T
Q  219 c 219  Q
    |    
T  3105404 c 3105404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 26155131 - 26155019
Alignment:
Q  70 gagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagt 169  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||  ||||||||| |||||||||||||| || ||    
T  26155131 gagtcccctatttatagaggtggagggctgcatagccgttataatggcacacctggctatggtggttacgaaatcgtgggaagtgtaaccgccagagcgt 26155032  T
Q  170 ttattgcgggaac 182  Q
    |||||||||||||    
T  26155031 ttattgcgggaac 26155019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 27347196 - 27347370
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||| ||| |||| |||||| |||||||||| || |||||||||||||||||||||  | ||| ||||||  |||||     
T  27347196 agattctaccttggggactgcattgaatcccctatgtatagacgtggagggctacaaagccgttgtaatggcacacctaacactgacggttacgaaatca 27347295  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||| ||||||||| ||| | ||||||||||||||||| || |  ||||| |||  ||||||||||||||||||||    
T  27347296 tgggaagtgtaactgcctatgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccagtctct 27347370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 26159236 - 26159154
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggct 98  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||    
T  26159236 cagagagagtgagggtttagaggaagagatagattctaccttgggaactgctttgagtcccctatttatagaggtggagggct 26159154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 391459 - 391659
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  391459 agagagtgagggtttagaggaagagatagattctaccttggggactgctatgagtcccctatttatagaggtggagggttgcagagccgttgtaatggca 391558  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||  ||||  ||| |||||||||||||| |||||||||||||||||| || || ||||| |||| |||||||||||| |||||    
T  391559 cacctggctctggcggttacgaaattatgggaagtgtaaccgccagagagtttattgcgggaacctgcagagagacgttgtggttcgtttgaactagtct 391658  T
Q  219 c 219  Q
    |    
T  391659 c 391659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 380767 - 380961
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||| ||||||||||  |||| ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  380767 gtgagggtttagaggaagagatagatt-taccatggggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacct 380865  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    |||||||| |||||  |||| |||  |||||||||||||| ||| |||||||||||||| ||||| ||||| |||| |||||||||||||||||||    
T  380866 ggctctggaggttacgaaattgtgagaagtgtaaccgccagagactttattgcgggaacgtgtagagagacgttgtggttcgtttgaaccagtctc 380961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 2085945 - 2085741
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  2085945 cagagagagtgagggtttagaggaagagatagattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagaaccgttgtaatg 2085846  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  ||||||||| ||||||||  ||||    |||||||||||||||||| || |||||||||| |||||||||||| ||    
T  2085845 gcacacctggctctggcggttacgaaatcgtgggaagtgtaattgccaggtcgtttattgcgggaacatgcagagagacattgtggttcgtttgaactag 2085746  T
Q  216 tctct 220  Q
    |||||    
T  2085745 tctct 2085741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 18040683 - 18040480
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||| |||||||||| |||||| ||| ||||||||||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18040683 cagagagagtgaaggtttagaggaagagattgattctaccttggggactgct-tgagtcccctatttatagaggtggagagctgcagagccgttgtaatg 18040585  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||| ||||||  ||||||||| |||||||||||||| |||||||||||||||||| || || ||||| |||| |||||||||||||||    
T  18040584 gcacacctggctctgacggttacgaaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccag 18040485  T
Q  216 tctct 220  Q
    |||||    
T  18040484 tctct 18040480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 7999650 - 7999850
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||  || |||||||||||||||| ||||||  ||||||||||| ||    
T  7999650 agagagtgagggtttagaggaagagatagattctaccttggggactgccgtgagtctcctgtttatagaggtggaggactgcag--ccgttgtaatgaca 7999747  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||| || ||||| |||| ||||||| ||||||||||    
T  7999748 cacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacatgcagagagacgttgtggttcgttggaaccagtct 7999847  T
Q  219 ctg 221  Q
    |||    
T  7999848 ctg 7999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 18574220 - 18574016
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctacctt---ggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    |||| ||||| ||||||||| |||||||||| |||||||   ||||| |||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  18574220 agagagtgagagtttagaggaagagatagattctaccttcttggggaatgctttgagtcccctatttatagaggtggagggctgcagagccgttgtaatg 18574121  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||| |||||| || || ||||| |||| ||||||||||||||     
T  18574120 gcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgtgggaacgtgcagagagacgttgtggttcgtttgaaccac 18574021  T
Q  216 tctct 220  Q
    |||||    
T  18574020 tctct 18574016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 24033762 - 24033965
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatag---aggtggagggctgcagagccgttgtaatg 115  Q
    |||| |||| |||||||||| |||||||||| |||| |||||||||||  ||||||| ||| |||||    |||||||||| ||||||||||||||||||    
T  24033762 agagagtgaaggtttagaggaagagatagattctacattggggactgctatgagtcccctagttataatataggtggagggttgcagagccgttgtaatg 24033861  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||| || || |||||||||  |||||||||||||||||||||||| |||||||||||||||||| || || |||||||||| |||||||||||||||    
T  24033862 gcacacttgactttggcggttacgaaatcgtggaaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacattgtggttcgtttgaaccag 24033961  T
Q  216 tctc 219  Q
    ||||    
T  24033962 tctc 24033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 32009213 - 32009012
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| ||||||||||  ||||||||||| | |  ||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  32009213 agagagtgagggtttagaggaagagatagattttaccttggggagtactttgagtcccctatttatagaggtggagggctgtagagccgttgtaatggca 32009114  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||| ||||||||||||  ||||||||| |||||||| ||| | |||| ||||||||||||| || || |||||  ||| ||||||||||||||||||    
T  32009113 cacctgactctggcggttacgaaatcgtgggaagtgtaatcgctagagagattattgcgggaacgtgcagagagacgctgtggttcgtttgaaccagtct 32009014  T
Q  219 ct 220  Q
    ||    
T  32009013 ct 32009012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 7454866 - 7454666
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||| ||| |||||||||| ||| ||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  7454866 agagagtgagggtttacaggaagagatagattctaacttggggactgctatgagtcccctatttatagaggtggaaggctgcagagccgttgtaatggca 7454767  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||  ||||||||| ||||||||||| || ||||||||||| |||||| || |  ||||| |||| | |||| |||||| ||||    
T  7454766 cacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcatagagtttattgtgggaacgtgcatagagacgttgtggctcgtatgaaccggtct 7454667  T
Q  219 c 219  Q
    |    
T  7454666 c 7454666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 10532983 - 10532801
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 124  Q
    |||||||||||| | ||||||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10532983 tgagggtttagatgaagagataaattctaccttggggactccattaagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 10532884  T
Q  125 gctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtt 207  Q
     ||||||||||||  ||||||||||||||||||||||||  | ||||||||| ||||| || || ||||| |||| |||||||    
T  10532883 actctggcggttacgaaatcgtggaaagtgtaaccgccagggtgtttattgcaggaacgtggagagagacgttgtggttcgtt 10532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 11709373 - 11709562
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||| |||||||||||| ||| |||||||  ||||||| | |||||| |||| ||||||||||||||| |||||||||||||||||||||||||     
T  11709373 gtgagggttaagagggagagatcgattctacctttcggactgctgagagtcccctatatatagaggtggagggttgcagagccgttgtaatggcacacca 11709472  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
    |||||||||  |||  ||||||||| |||||||||||||| |||| |||||| |||||| || || ||||| |||| |||||||||||||    
T  11709473 ggctctggcatttacgaaatcgtgggaagtgtaaccgccagagagattattgtgggaacgtgcagagagacgttgtggttcgtttgaacc 11709562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 41280983 - 41280846
Alignment:
Q  45 tagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatc 144  Q
    ||||| |||||||||||||||   ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||  |||||    
T  41280983 tagattctaccttggggactgttatgagtcccctatttatagaggtggaggactgcagagccgttgtaatggcacacctgactctgggggttacaaaatc 41280884  T
Q  145 gtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  41280883 gtgggaagtgtaaccgccagagagtttattgcgggaac 41280846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 24060563 - 24060757
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||| || ||||||| ||||||||| ||||||   ||||||  ||| |||||||||||||||||||||||||||||| ||||||||||     
T  24060563 gtgagggtttagaggaagcgatagattctaccttggagactgctaagagtcccttatatatagaggtggagggctgcagagccgttgtgatggcacacca 24060662  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||||||||||||||  ||||||| | ||||||||| |||| |||| ||||||| |||||||| || ||||  |||| ||||||| ||||| ||||    
T  24060663 ggctctggcggttacaaaatcgtaggaagtgtaactgccagagagattattgcaggaacatgcagagagatgttgtggttcgttagaaccggtct 24060757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 25820743 - 25820908
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||| ||||||||||  ||||||| |||||| |||||||||||||||||| |||||||||||||||||||||  ||||| ||||||  ||||||    
T  25820743 agattctaccatggggactgcattgagtcccctatttttagaggtggagggctgcaaagccgttgtaatggcacaccttactctgacggttacgaaatcg 25820842  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaa 211  Q
    ||| |||||||||||||   ||||||||||| ||||| || |  ||||| |||  |||||||||||    
T  25820843 tgggaagtgtaaccgcctgtgagtttattgctggaacgtggaaagagacgttggggttcgtttgaa 25820908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 33273701 - 33273604
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacac 121  Q
    ||||||||||||||  |||||||||| |||||||||||||| |  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  33273701 gtgagggtttagagaaagagatagattctaccttggggactcctatgagtcccctatttatagaggtggagggttgcagagccgttgtaatggcacac 33273604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 22609631 - 22609492
Alignment:
Q  82 tatagaggtggagggctgcagagccgttgtaatgg--cacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcggg 179  Q
    ||||||||||||||| ||||||| |||||| ||||  |||||||||||||||||||||  ||||||||  | ||||||||| || ||||||||||||| |    
T  22609631 tatagaggtggagggttgcagagtcgttgtgatggtacacacctggctctggcggttacgaaatcgtgagatgtgtaaccgacagagagtttattgcgtg 22609532  T
Q  180 aacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    |||||| || |||| || || |||||||||||||| ||||    
T  22609531 aacatgcagagagatatcgtggttcgtttgaaccaatctc 22609492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 17775705 - 17775755
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgc 66  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  17775705 cagagagagtgagggtttagaggaagagatagattctaccttggggactgc 17775755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 1788677 - 1788732
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgca 101  Q
    |||| ||||||||| ||||||  ||||||  |||||||||||||||||||||||||    
T  1788677 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgca 1788732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 33273598 - 33273523
Alignment:
Q  143 tcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||| |||||||||||||| |||  ||||||||||||| || || ||||| |||| | ||||||||||| ||||    
T  33273598 tcgtgggaagtgtaaccgccatagaacttattgcgggaacgtgcagagagacgttgtggctcgtttgaaccggtct 33273523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 22282225 - 22282161
Alignment:
Q  98 tgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgcc 162  Q
    |||||||||||||||||||||||| ||  |||||||||||  ||||| ||  |||||||| ||||    
T  22282225 tgcagagccgttgtaatggcacacgtgtgtctggcggttacgaaatcttgagaagtgtaatcgcc 22282161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 23574394 - 23574594
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| |||||||| |||||||  ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  23574394 agagagtgagggtttagaggaagagatagattctaccttgtggactgctttgagtcccctatttatagaggtagagggctgcagagccgttgtaatggca 23574493  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||| |||||||||| ||||  || ||||||||||||||||| ||| ||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||    
T  23574494 cacttggctctggctgttacgaagtcgtggaaagtgtaaccaccagagagtttattgcgagaacatgtagagagacgttgtggttcgtttgaaccagtct 23574593  T
Q  219 c 219  Q
    |    
T  23574594 c 23574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 19860251 - 19860052
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||| |||||||||| | ||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |    
T  19860251 agagagtgacggtttagaggaatagataaattctaccttggggactgctgtgagtcccctatttatagaggtggagggctgcggagccgttgtaatggga 19860152  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||| |||| |||||| |||||||||| | ||||| |||  ||||||||||||||||||    
T  19860151 cacctggctctggcggttacgaaatcgtgggaagtgtaaccaccagagagattattgtgggaacatgttgagagacgttgcggttcgtttgaaccagtct 19860052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 18736007 - 18736200
Alignment:
Q  26 gagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctgg 125  Q
    ||||||||||||| ||||||| || ||| ||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18736007 gagggtttagaggaagagataaattctagcttggggactgctatgagtcccctatttatagaggtggagggctgctgagccgttgtaatggcacacctgg 18736106  T
Q  126 ctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    ||||||||||||  |||| |||| |||| ||| ||||| |||||||||||||||||| ||||| ||||| |||| | |||||||||||| ||||    
T  18736107 ctctggcggttacgaaattgtgggaagtctaatcgccagagagtttattgcgggaacgtgtagagagacgttgtggctcgtttgaaccaatctc 18736200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 4409193 - 4409397
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||  ||||    
T  4409193 cagagagagtgagggtttagaggaagagatagattctaccttggggactgcattgaatcctctatttatagaggtggagggctgcaaagccgttacaatg 4409292  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||| |||||||||||||  ||||||||  |||||||||||| |  | ||||||||||||||| || |  ||||| |||| |||||||||||||||    
T  4409293 gcacaccttgctctggcggttacaaaatcgtgagaagtgtaaccgctagggcgtttattgcgggaacgtgcatagagacgttgtggttcgtttgaaccag 4409392  T
Q  216 tctct 220  Q
    |||||    
T  4409393 tctct 4409397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 7968695 - 7968493
Alignment:
Q  18 gagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    ||||| ||||||||| ||||| | |||||||| || |||||||||||||  ||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  7968695 gagagagtgagggttaagaggaaaagatagattctgccttggggactgcattgagtcccctatatatagaggtggagggctgcagagctgttgtaatggc 7968596  T
Q  118 acacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtc 217  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||  | |||||||| |||||| || || ||||| |||| |||||||||||||||||    
T  7968595 acacctgactctggcggttacgaaattgtggaaagtgtaaccgccagggggtttattgtgggaacgtgcagagagacgttgtggttcgtttgaaccagtc 7968496  T
Q  218 tct 220  Q
    |||    
T  7968495 tct 7968493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 14910605 - 14910805
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatc-ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    |||| ||||||||||||||| |||| |||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  14910605 agagagtgagggtttagaggaagagctagatttctaccttggggactgcagtgagtcccctatatatagaggtggagggctgcaaagccgttgtaatggc 14910704  T
Q  118 acacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtc 217  Q
    |||| | |||||||| ||||  |||| |||| |||||||||||||| |||||||||||||||||| || || ||||| |||| ||||||||||||| |||    
T  14910705 acacatcgctctggcagttacgaaattgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccggtc 14910804  T
Q  218 t 218  Q
    |    
T  14910805 t 14910805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 8306061 - 8306261
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| ||||||     |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8306061 cagagagagtgagggtttagaggaagagatt----ctaccttggggactgctgtgagtcccctatttatagaggtggagggttgcagagccgttgtaatg 8306156  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||| |||| || ||||  ||||| |||||||||||||||||| |||||||||||||||||| |  || ||||| ||||   |||||||||||||    
T  8306157 gcacacctgactctagcagttatgaaatcatggaaagtgtaaccgccagagagtttattgcgggaacctacagagagacgttgtgactcgtttgaaccag 8306256  T
Q  216 tctct 220  Q
    |||||    
T  8306257 tctct 8306261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 12738495 - 12738694
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||| ||||||||||| |||||||||| |||||| |||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  12738495 agagagtgggggtttagaggaagagatagattctacctaggggactgctatgagtcccctatttatagaggtggagggttgcagagccgttgtaatggca 12738594  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    || |||||| || || |||  ||||||||| |||||||||| | | |||||||||||||||||| || || ||||| |||| |||||||||||| |||||    
T  12738595 catctggctatgacgattacgaaatcgtgggaagtgtaacctctagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaactagtct 12738694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 15119921 - 15119719
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||| ||||||||| | |||||||||| |||||||||||| ||   ||||||| |||||||||||||||||| | |||||||||  |||||||    
T  15119921 cagagagagtgggggtttagatgaagagatagattctaccttggggattgt--tgagtcccctatttatagaggtggagagttgcagagccagtgtaatg 15119824  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    ||||||||||||||||||||||  ||||||||| |||| ||||||| | |||||||||||||||||| || || ||||| |||| ||||||||||||| |    
T  15119823 gcacacctggctctggcggttacaaaatcgtgggaagtataaccgctagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacctg 15119724  T
Q  216 tctct 220  Q
    |||||    
T  15119723 tctct 15119719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 18014652 - 18014464
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||| ||||| |||||| ||| ||||||||||||||||  ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||    
T  18014652 gtgagggttaagaggaagagattgattctaccttggggactgctatgagtcccctacatatagaggtggagggctgcagagccgttgtaatggcacacct 18014553  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaac 212  Q
     |||||||||||||  ||||||||| |||| ||||| ||| |||| ||||||||||||| |  ||| | ||||||| ||||||||||||    
T  18014552 agctctggcggttacgaaatcgtgggaagtctaaccaccagagagattattgcgggaacgtacagtcaaacattgtggttcgtttgaac 18014464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 29482591 - 29482791
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||| ||||||||||| |||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  29482591 agagagtgggggtttagaggaagagatagattctaccttggggactactatgagtcccctatttatagaggtggagggctgtagagtcgttgtaatggca 29482690  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||||||| ||| |||||||  ||||||||| |||| |||| |  | ||||||||||||||||||||| || ||||| |||| | ||||||||||| ||||    
T  29482691 cacctggttctagcggttacgaaatcgtgggaagtataactgtgagagagtttattgcgggaacatgcagagagacgttgtggctcgtttgaaccggtct 29482790  T
Q  219 c 219  Q
    |    
T  29482791 c 29482791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 18728926 - 18729121
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||| ||||||| |||||||||| |||||||| ||||||   ||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||    
T  18728926 gtgagggattagaggaagagatagattctaccttgaggactgttatgagtcccctatttatagaggtggagggctgcagagacattgtaatggaacacct 18729025  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    ||||||||||| ||  ||||||||| |||||||||||||| |||||||||||||| ||| || || ||||| |||| | || |||||||| |||||    
T  18729026 ggctctggcgggtacaaaatcgtgggaagtgtaaccgccatagagtttattgcggaaacgtgcagagagacgttgtggctcctttgaaccggtctc 18729121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 29095190 - 29095016
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||    
T  29095190 agattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctaactctgacggttacgaaatcg 29095091  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||| |||||||||||||   ||||||||||||||||| || |  ||||| |||  ||||||||||||| ||||||    
T  29095090 tgggaagtgtaaccgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccggtctct 29095016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 24438760 - 24438560
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| ||||||||||  ||||||||| ||||| |||||||| |||||||||||||| ||||  ||||||| |||||||||| ||    
T  24438760 agagagtgagggtttagaggaagagatagattataccttggg-actgctgtgagtcccctatttatagaggtagaggattgcagagtcgttgtaatgaca 24438662  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||||||||||| |||||||  ||||||||| |||||||||||||| |||||| ||||| ||||| || |  |||||  ||| |||||||||||||| |||    
T  24438661 cacctggctcttgcggttacgaaatcgtgggaagtgtaaccgccatagagttgattgcaggaacgtgcaaagagacgatgtggttcgtttgaaccaatct 24438562  T
Q  219 ct 220  Q
    ||    
T  24438561 ct 24438560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 18258794 - 18258594
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||  | | |||||| ||||||||| |||||  |||||||| |||||||||||||| |||||||| |||||||||||| |||||    
T  18258794 agagagtgagggtttagagaaaaatatagattctaccttggagactgttgtgagtcccctatttatagaggtagagggctgtagagccgttgtagtggca 18258695  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||||||||||||  |||||  |||| |||| ||||||||| || |||||||||||||||||||  ||  | ||||| |||| |||| |||||||| ||||    
T  18258694 cacctggctctgatggttacgaaattgtgggaagtgtaactgctaaagagtttattgcgggaatgtgcggagagacgttgtggttcctttgaaccggtct 18258595  T
Q  219 c 219  Q
    |    
T  18258594 c 18258594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 23524128 - 23524227
Alignment:
Q  83 atagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||||||||||    
T  23524128 atagacgtggagggctgcagagccattgtaatggcacacctggctctggcggttaagaaatcgtggaaagtgtaaccatcaaagagtttattgcgggaac 23524227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 15349796 - 15349665
Alignment:
Q  51 ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaa 150  Q
    |||| |||||||||||   |||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||||  ||||||||| |    
T  15349796 ctacgttggggactgctaagagtcccctatatatagaggtggagggctgcagagccgttgtgatagcacacctgggtctggcggttacgaaatcgtggga 15349697  T
Q  151 agtgtaaccgccaaagagtttattgcgggaac 182  Q
    ||||||||||| | |||| |||||| ||||||    
T  15349696 agtgtaaccgcgagagagattattgtgggaac 15349665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 18043337 - 18043455
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| ||||||| || ||||||||||||||||  | ||||| ||||||||||||||||||||||||| |||||||||||||    
T  18043337 cagagagagtgagggtttagaggaagagataaattctaccttggggactgcatttagtcccctatttatagaggtggagggctgcaaagccgttgtaatg 18043436  T
Q  116 gcacacctggctctggcgg 134  Q
     ||| | || |||||||||    
T  18043437 acacgcatgactctggcgg 18043455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 15319172 - 15319015
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||  |||| | ||| ||||||||||||||||   |||| | |||| ||||||||||||||||||||||| |||||| |||| ||||||    
T  15319172 gtgagggtttagagaaagag-tcgattctaccttggggactgctaagagttccctatatatagaggtggagggctgcagagtcgttgtgatggtacacct 15319074  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
     | |||||||||||  ||||||||| |||||||||||| | |||| ||||||| |||||    
T  15319073 aggtctggcggttacgaaatcgtgggaagtgtaaccgctagagagattattgcaggaac 15319015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 15369792 - 15369661
Alignment:
Q  51 ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaa 150  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||||| |||| |||| | |||| |||||| | |||||||||||  |||| || | |    
T  15369792 ctaccttggggactgctaagagtcctctatatatagaggtggagggctgtagagtcgttatgatggtacacctaggtctggcggttacgaaattgtagga 15369693  T
Q  151 agtgtaaccgccaaagagtttattgcgggaac 182  Q
    ||||||||||||| | || |||||||||||||    
T  15369692 agtgtaaccgccagacagattattgcgggaac 15369661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 3876376 - 3876512
Alignment:
Q  77 ctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgc 176  Q
    |||| |||||||||||||||||||||||||||||| | | |||||||   |||||||||||  ||||||| | |||||||| || || |||| |||||||    
T  3876376 ctatatatagaggtggagggctgcagagccgttgtgaagacacacctaagtctggcggttacgaaatcgtaggaagtgtaatcgtcagagagattattgc 3876475  T
Q  177 gggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
    ||||| ||| |  ||||| |||||| || ||||||||    
T  3876476 gggaatatgcaaagagacgttgtagctcatttgaacc 3876512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 17757140 - 17757022
Alignment:
Q  96 gctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagaca 195  Q
    ||||| ||||||||||||||||||||||  ||||| ||||||  ||||||||| |||||||||||||   |||||||||| |||||| || |  |||||     
T  17757140 gctgccgagccgttgtaatggcacaccttactctgacggttacaaaatcgtgggaagtgtaaccgcctgtgagtttattgtgggaacgtggaaagagacg 17757041  T
Q  196 ttgtagttcgtttgaacca 214  Q
    |||  ||||||||||||||    
T  17757040 ttggggttcgtttgaacca 17757022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 14480001 - 14480135
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 124  Q
    |||||||||||||||| |||||||| |||||| ||||||||    |||||| |||| ||||  |||||  |||||||||||| |||||||||||||| ||    
T  14480001 tgagggtttagaggga-agatagattctacctaggggactgttaagagtcccctatatataccggtgggtggctgcagagccattgtaatggcacacgtg 14480099  T
Q  125 gctctggcggttagcaaatcgtggaaagtgtaaccg 160  Q
      || ||| ||||  |||||||||||| ||||||||    
T  14480100 tgtccggcagttacgaaatcgtggaaaatgtaaccg 14480135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 21508716 - 21508637
Alignment:
Q  141 aatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||||| |||||||||||||| |||||||||||| ||||| || || |||||  ||| ||||| ||||||||||||||    
T  21508716 aatcgtgggaagtgtaaccgccatagagtttattgcaggaacgtgcagagagacgctgtggttcgattgaaccagtctct 21508637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 7099368 - 7099285
Alignment:
Q  77 ctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccg 160  Q
    ||||||||||||||||  |  |||||||||||||||||||||||  ||| ||  |||||||  |||||| | ||||||||||||    
T  7099368 ctatttatagaggtgggtgaatgcagagccgttgtaatggcacatgtgggtcccgcggttacgaaatcgggaaaagtgtaaccg 7099285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 8795262 - 8795345
Alignment:
Q  77 ctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccg 160  Q
    ||||||||||||||||  |  |||||||||||||||||||||||  ||| ||  |||||||  |||||| | ||||||||||||    
T  8795262 ctatttatagaggtgggtgaatgcagagccgttgtaatggcacatgtgggtcccgcggttacgaaatcgggaaaagtgtaaccg 8795345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 6109583 - 6109473
Alignment:
Q  51 ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttg---taatggcacacctggctctggcggttagcaaatcgtg 147  Q
    ||||||||||||||||   |||||| || | |||||||||||  |  |||||| ||||||   |||| |||||| ||  |||||||||||  ||||||||    
T  6109583 ctaccttggggactgcgaggagtcccctttatatagaggtgggtgaatgcagaaccgttgcagtaatagcacacatgtgtctggcggttacgaaatcgtg 6109484  T
Q  148 gaaagtgtaac 158  Q
    |||||||||||    
T  6109483 gaaagtgtaac 6109473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 1724 - 1520
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||||  ||||| | ||||||||||||||||| ||||| ||||| |||||||||    
T  1724 cagagagagtgagggtttagaggaagagatagattctaccttggggactgctttgagtgccctatttatagaggtggacggctgtagagctgttgtaatg 1625  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
    |||||||||||||| || ||||  ||||||||  |||||||||||||| |||||||||||||||||| ||||| ||||  |||| |||||||||||||||    
T  1624 gcacacctggctctagcagttataaaatcgtgagaagtgtaaccgccagagagtttattgcgggaacgtgtagagagatgttgtggttcgtttgaaccag 1525  T
Q  216 tctct 220  Q
    |||||    
T  1524 tctct 1520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 19442313 - 19442109
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||    
T  19442313 cagagagagtgagggtttagaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggtggagtgctgcaaagccgttgtaatg 19442214  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
     |||| ||| ||||||||||||  |||||| || |||| ||||||||| ||||||||||| |||||| ||||| ||||| |||| ||||| |||||||||    
T  19442213 acacatctgactctggcggttacgaaatcgggggaagtataaccgccagagagtttattgtgggaacgtgtagagagacgttgtggttcgattgaaccag 19442114  T
Q  216 tctct 220  Q
    |||||    
T  19442113 tctct 19442109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 19967621 - 19967417
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| ||||||||||||||| |||||| ||| ||||||| ||||||||  ||||||| |||||||||||||||||||| |||| | |||||||||||    
T  19967621 cagagagagtgagggtttagaggaagagatggattctaccttagggactgctttgagtcccctatttatagaggtggagggttgcataaccgttgtaatg 19967522  T
Q  116 gcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccag 215  Q
     |||||||||||||||||||||  |||||||||   |||||||||||| |||||||||||||||||| || || ||||| |||| |||||||||||||||    
T  19967521 acacacctggctctggcggttacgaaatcgtgggtggtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccag 19967422  T
Q  216 tctct 220  Q
    |||||    
T  19967421 tctct 19967417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 9858973 - 9859171
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatgg----caca 120  Q
    |||||||||||| | ||||||| || ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||  | |    ||||    
T  9858973 tgagggtttagatgaagagatatattctaccttggggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtggttgcacacaca 9859072  T
Q  121 cctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    | |||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||| || || ||||| |||| |||||||||||| ||||||    
T  9859073 cttggctctgacggttacgaaatcgtgggaagtgtaaccgccaaagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacgagtctc 9859171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 38621812 - 38621997
Alignment:
Q  28 gggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggct 127  Q
    ||||||||||| ||||  |||| |||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||  |||||    
T  38621812 gggtttagaggaagagtgagattctaccttggggactgcagtgagtcccttatatatagaggtggagggctgcagagccgttgtaatggcacatttggct 38621911  T
Q  128 ctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
    |||| |||||  ||||||||||||||||||| |||||| | |||||||||||||| || || ||||| |||| |||||||| ||||    
T  38621912 ctggtggttacgaaatcgtggaaagtgtaactgccaaacaatttattgcgggaacgtgcagagagacgttgtggttcgttttaacc 38621997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 8990961 - 8990805
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||| ||||| ||||| |||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  8990961 agagagtgagggtttagaggaagagttagattctaccgtggggactgcagtgagtcccctatttacagaggtggagggctgtagagccgttgtaatggca 8990862  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattg 175  Q
    ||||||||||| |||||||  ||||||||| ||||||||| | || |||||||||||    
T  8990861 cacctggctctagcggttacgaaatcgtgggaagtgtaactgtcagagagtttattg 8990805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 8995630 - 8995475
Alignment:
Q  26 gagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctgg 125  Q
    ||||||||||||| |||| ||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| | || ||||||| |    
T  8995630 gagggtttagaggaagagttagattctaccttggggaatgcagtgagtcccctatttatagaggtggagggctgcagagccgttg-attgacacacctag 8995532  T
Q  126 ctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    |||| |||||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  8995531 ctctagcggttacgaaatcgtgggaagtgtaaccgccatagagtttattgcgggaac 8995475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 21817911 - 21817775
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||  ||||| ||||||  ||||||    
T  21817911 agattctaccttggggactgcattgagtcccctatttataaaggtggatggccgcagagccgttgtaatggcacacctaactctgacggttacgaaatcg 21817812  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    ||| ||||||||| |||   |||||||||||||||||    
T  21817811 tgggaagtgtaacagcctgtgagtttattgcgggaac 21817775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 24974085 - 24973924
Alignment:
Q  19 agagcgtgagggttt-agagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    |||| |||||||||| ||||| |||||  ||| ||||||||| ||||||  ||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  24974085 agagagtgagggttttagaggaagaga--gattctaccttggtgactgcattgagtcccctatttatagagttagagggctgcagagccgttgtaatggc 24973988  T
Q  118 acacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaa 181  Q
    ||||||  ||||| ||||||  ||||||||| |||||||||||||   |||||||||| |||||    
T  24973987 acacctaactctgacggttacgaaatcgtgggaagtgtaaccgcctgtgagtttattgtgggaa 24973924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 22186159 - 22186045
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||  ||| | ||||||  ||||||    
T  22186159 agattctaccttggggactgctttaagtcccctatttatagaggtggatggctgcagagccgttgtaatggcacaccttactcggacggttacaaaatcg 22186060  T
Q  146 tggaaagtgtaaccg 160  Q
    ||| |||||||||||    
T  22186059 tgggaagtgtaaccg 22186045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 21815696 - 21815619
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    |||| ||||||||| ||||||  |||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  21815696 agattctaccttggagactgcattgagtcccatatttatagaggtggagggctgcagagctgttgtaatggcacacct 21815619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 1613 - 1810
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||| |||||||||| |||| ||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||| || |    
T  1613 gtgagggtttagaggaagagatagattctacattggggactgttgtgagtcccctatttatagaggtggatggctgcagagccgttgtaatggcatactt 1712  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagag-tttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||| |||||||||||||| || || ||||| |||| |||||||||||||| |||||    
T  1713 ggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagttttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccaatctct 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 15365 - 15517
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| |||||  ||||||||   ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  15365 agagagtgagggtttagaggaagagatagattctaccgcggggactgttatgagtcccctatttatagaggtggagggctgcagagccgttgcaatggca 15464  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagttt 171  Q
      |||| ||||||||||||  ||||||||| |||||||||||||| |||||||    
T  15465 tgcctgactctggcggttactaaatcgtgggaagtgtaaccgccagagagttt 15517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 1235 - 1040
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    ||||||||||||||| |||||||||| |||| |||| |||||| |||||||| |||||||||||||||||||||| || |||||||||||||| ||||||    
T  1235 gtgagggtttagaggaagagatagattctacgttggagactgctgtgagtcccctatttatagaggtggagggctacatagccgttgtaatggaacacct 1136  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    |||||| ||| |||  ||||||||| |||||||||||||| |||||||||||| |||||||| || || || |||| |||||||||||||||||||    
T  1135 ggctctagcgattacgaaatcgtgggaagtgtaaccgccatagagtttattgcaggaacatgcagagaaacgttgtggttcgtttgaaccagtctc 1040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 74845 - 75054
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||| ||| |||||| |||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  74845 agagagtgatggtatagaggaagagatagattctaccttggggaatgcggtgagtcccctatttatagaggtggagggctgtagagccgttgtaatggca 74944  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||| ||||  ||||||| | |||||||||||||| |||||||||||||||||| ||  | || || |||| | ||||||||||||||||    
T  74945 cacctggctctggcagttatgaaatcgtcggaagtgtaaccgccagagagtttattgcgggaacgtgcggagacacgttgtggctcgtttgaaccagtct 75044  T
Q  219 ctgctgctcc 228  Q
    | | ||||||    
T  75045 cggttgctcc 75054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 68689 - 68882
Alignment:
Q  35 gagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcgg 134  Q
    |||| ||| |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  68689 gaggaagatatagattctaccttgggcactgcggtgagtcccctatttatagaggtggagggctgcaaagccgttgtaatgacacaccttgctttggcgg 68788  T
Q  135 ttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctctgctgctcc 228  Q
    |||  ||||||||| |||||||||||| | |||||||||||||||||| ||    ||||| |||| | |||||||||| |||||| | ||||||    
T  68789 ttacgaaatcgtgggaagtgtaaccgctagagagtttattgcgggaacgtgggaagagacgttgtggctcgtttgaactagtctcggttgctcc 68882  T

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Target: scaffold0150 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 30252 - 30056
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    |||||| |||||||| |||||||||| ||||||| |||||||| ||||||||  ||||||||||||||||||||||||||||| |||||| || ||||||    
T  30252 gtgaggatttagaggaagagatagattctaccttagggactgctgtgagtcccgtatttatagaggtggagggctgcagagccattgtaacggaacacct 30153  T
Q  124 ggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    |||||||| |||||  |||| |||| |||||||||| ||| ||| |||||||||||||| ||||| ||||| |||| ||||||||||||||||||||    
T  30152 ggctctggtggttacgaaattgtgggaagtgtaacctccagagattttattgcgggaacgtgtagagagacgttgtggttcgtttgaaccagtctct 30056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 16516 - 16315
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttgggg-actgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    |||| ||||| ||||| ||| ||||||| || ||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||| |||||||||     
T  16516 agagagtgagagtttaaaggaagagataaattctaccttgggggactgctttgagtcccctatttatagaggtggagggctgcagagccattgtaatggt 16417  T
Q  118 acacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtc 217  Q
    ||||||||||||||||||||  ||||||||| |||||||||| ||| |||||||||||||||||| || || ||||  |||| |||||||||||||||||    
T  16416 acacctggctctggcggttacaaaatcgtgggaagtgtaaccaccagagagtttattgcgggaacgtgcagagagatgttgtggttcgtttgaaccagtc 16317  T
Q  218 tc 219  Q
    ||    
T  16316 tc 16315  T

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Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 22915052 - 22915252
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||  ||||||| ||||||||| |||||||| ||||||||||||||||||||| |    
T  22915052 agagagtgagggtttagaggaagagatagattctaccttggggactgctatgagtcccctatttataaaggtggagagctgcagagccgttgtaatggta 22915151  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||| |||||| ||||||||  ||||||||| ||||||||| || | |||||||||||||||||| || || ||||| ||||  ||||||||||| |||||    
T  22915152 cacttggctccggcggttatgaaatcgtgggaagtgtaacagctagagagtttattgcgggaacgtgaagagagacgttgtgattcgtttgaactagtct 22915251  T
Q  219 c 219  Q
    |    
T  22915252 c 22915252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 16853201 - 16853014
Alignment:
Q  26 gagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctgg 125  Q
    |||||||||||||||   | |||| || |||||||||||||  ||||||| ||||||||||||||||||||||||| |   |||||||||||||||||||    
T  16853201 gagggtttagagggaagaaaagattctcccttggggactgcattgagtcccctatttatagaggtggagggctgcaaatatgttgtaatggcacacctgg 16853102  T
Q  126 ctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
    ||||||||||||  ||||||||| |||||||||||||| |||||||||||||| ||| || || ||||| |||| | | |||||||||    
T  16853101 ctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcggtaacgtgcagagagacgttgtggcttgtttgaacc 16853014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 19790346 - 19790476
Alignment:
Q  90 tggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagt 189  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||| ||||||||||| || ||||||||||| |||||| || ||     
T  19790346 tggagggctgcagagccgttgtaatggcacacctgactctgacggttacgaaatcgtgggaagtgtaaccgtcagagagtttattgtgggaacgtgcaga 19790445  T
Q  190 gagacattgtagttcgtttgaaccagtctct 220  Q
    ||||| |||| ||||||||||||||||||||    
T  19790446 gagacgttgtggttcgtttgaaccagtctct 19790476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 16914706 - 16914846
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||||||||| |||| |||||||||| || | ||||||||||    ||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  16914706 agagagtgagggttttgaggaagagatagattctgctttggggactgttaagagccctctatatatagaggtggagggctgcagagccattgtaatggca 16914805  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaacc 159  Q
    ||  | | |||||||||||  ||||||||| | ||||||||    
T  16914806 cagatcggtctggcggttacgaaatcgtgggaggtgtaacc 16914846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 1998003 - 1998087
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgc 100  Q
    ||||||| ||||||||||||||  ||||| |||| ||||||||||||||||  ||||| | |||||||||||||||||| |||||    
T  1998003 cagagagagtgagggtttagagacagagacagattctaccttggggactgctttgagtaccctatttatagaggtggagagctgc 1998087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 19773386 - 19773462
Alignment:
Q  19 agagcgtgagggtttagaggga-gagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggag 94  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||||||||| |||||||  ||||||||||||||||||    
T  19773386 agagagtgagggtttagaaggaagagatagattctaccttggggactgctgtgagtctcctatttatagaggtggag 19773462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 3559311 - 3559119
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 124  Q
    ||||||||||||||||||| ||||| |||||||||| ||||    |||||| |||| ||||||| |||  ||||||||||||||||||||||  ||  |     
T  3559311 tgagggtttagagggagag-tagattctaccttgggaactgttaagagtcccctatatatagagatgggtggctgcagagccgttgtaatggttcatgt- 3559214  T
Q  125 gctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    | ||  || ||||  |||||||||||||||||||| ||||||||    |||||||||||||    ||||  ||| |||||||||||||| |||||    
T  3559213 gttcctgcagttacgaaatcgtggaaagtgtaacctccaaagagagatttgcgggaacatgcgaagagatgttgcagttcgtttgaaccggtctc 3559119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 22006498 - 22006590
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    ||||||||| ||||||  ||| |||| ||||||||||||||||   ||||||  ||| ||||||||||||||||||||||| ||||||||||||    
T  22006498 gtgagggttaagaggggaaga-agattctaccttggggactgctacgagtcccttatatatagaggtggagggctgcagagtcgttgtaatggc 22006590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 22014015 - 22014107
Alignment:
Q  24 gtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggc 117  Q
    ||||||||| ||||||  ||| |||| ||||||||||||||||   ||||||  ||| ||||||||||||||||||||||| ||||||||||||    
T  22014015 gtgagggttaagaggggaaga-agattctaccttggggactgctacgagtcccttatatatagaggtggagggctgcagagtcgttgtaatggc 22014107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 44635823 - 44635947
Alignment:
Q  95 ggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagac 194  Q
    ||||||||||||||||||||||||||| ||  || | ||||||  ||||||||| |||||||||||||| ||||    | |||||||| ||    |||||    
T  44635823 ggctgcagagccgttgtaatggcacacgtgagtccgtcggttacgaaatcgtgggaagtgtaaccgccagagagagattcgcgggaacgtgcgaagagac 44635922  T
Q  195 attgtagttcgtttgaaccagtctc 219  Q
     ||||||||||||||||| ||||||    
T  44635923 gttgtagttcgtttgaactagtctc 44635947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 36639652 - 36639696
Alignment:
Q  77 ctatttatagaggtggagggctgcagagccgttgtaatggcacac 121  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||    
T  36639652 ctatttatagaggtgggtgaatgcagagccgttgtaatggcacac 36639696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 242673 - 242872
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||||| |||||||| |||| ||||| ||| | |||||||||  |||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  242673 agagagtgaggatttagaggaagagttagattctatcctggggactgaagtgagtactctatatatagaggtggagggcggcagagccgttgtaatggca 242772  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    ||||||||||| |||||||   |||||||| ||||||||| ||||||||||||||||||||||| || |  ||||| |||| ||||||||||||| ||||    
T  242773 cacctggctcttgcggttacgtaatcgtgggaagtgtaactgccaaagagtttattgcgggaacgtgcaaagagacgttgtggttcgtttgaaccggtct 242872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 253313 - 253512
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| |||| |||||||||| |||| ||||| |||||||||||||||  |||||||| |||| |||| ||||||| ||||||| || |||||||||||||    
T  253313 agagagtgacggtttagaggaagagttagattctaccttggggactgtagtgagtcccctatatataaaggtggacggctgcaaagtcgttgtaatggca 253412  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||||||||||||||||||  ||||||||| ||||||||| |||| |||||||||||||||||| || || ||||  |||| |||| |||||||| ||||    
T  253413 cacctggctctggcggttacgaaatcgtgggaagtgtaactgccagagagtttattgcgggaacgtgcagagagatgttgtggttcatttgaaccggtct 253512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 4396 - 4202
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| |||||||||| ||  |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  4396 agagagtgagggtttagaggaagagatagattctctcttggggactgatgtgagtcccctatttatagaggtggagggctgcagagccgttgtagtggca 4297  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaacc 213  Q
    ||||||||||||| |||||  ||||||||| | ||||||| || | ||||||||||||| |||| || ||  |||| |||| |||||||||||||    
T  4296 cacctggctctggtggttacgaaatcgtgggatgtgtaactgcgagagagtttattgcgagaacgtgcagatagacgttgtggttcgtttgaacc 4202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 151490 - 151299
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||| ||| |||||||||| ||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |    
T  151490 agagagtgagggtttaaaggaagagatagattctaccttagggaatgctgtgagtcccctatttatagaggtggagggctgcagagccgttgtagtggaa 151391  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaa 211  Q
     |||||||||| |||||||  ||||||||| ||||| || ||||| |||||||||||| ||||| |  || ||||| |||| |||||||||||    
T  151390 gacctggctctagcggttacgaaatcgtgggaagtg-aaacgccagagagtttattgcaggaacgtacagagagacgttgtggttcgtttgaa 151299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 37425 - 37234
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||| |||||||||||| ||| ||| |||| ||||||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  37425 agagagtgagggttaagagggagagattgattctatcttgcggactgccacgagtcccctatatatagaggtggagggctgcagagccgttgtgatggca 37326  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaa 211  Q
    | || ||||||||||||||  ||||||||| ||||||||||| || |||| ||||||| |||||||| || ||||| |||  ||| |||||||    
T  37325 cgccaggctctggcggttatgaaatcgtgggaagtgtaaccg-cagagagattattgcaggaacatgcagagagacgttgcggtttgtttgaa 37234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 19147 - 19268
Alignment:
Q  16 cagagagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatg 115  Q
    ||||||| |||||| |||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |    
T  19147 cagagagagtgaggatttagaggaagagatagattctaccttggggactgcagtgagtcccctatttatagaggtggagggctgcagagccattgtaacg 19246  T
Q  116 gcacacctggctctggcggtta 137  Q
    |||||||| ||||||| |||||    
T  19247 gcacacctagctctggtggtta 19268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 12323 - 12486
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||||||||||| | || |||||  ||||||||||  ||   ||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  12323 agagagtgagggtttagaggaatagttagattataccttggggtttgttatgagtcccctatatatagaggtgaagggctgcagagccgttgtaatggca 12422  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    |||| ||||||||||||||  ||||| ||| |||||||||||| | |||| |||||||||||||    
T  12423 caccaggctctggcggttacaaaatcatgggaagtgtaaccgctagagagattattgcgggaac 12486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 3029 - 2831
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||||| || |||  |||| ||||| ||||||| |||||||   ||||||| |||| ||||||||||||| |||||||||| ||||||||||||    
T  3029 agagagtgagggcttcgagaaagagttagattctaccttcgggactgttatgagtcc-ctatatatagaggtggagagctgcagagctgttgtaatggca 2931  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtct 218  Q
    |||| ||||||||||||||  ||||||||| |||||||||||| | |||| ||||| | ||||| || || ||||||||||  |||||||||||| ||||    
T  2930 caccaggctctggcggttacgaaatcgtgggaagtgtaaccgctagagagattattactggaacgtgcagagagacattgtgtttcgtttgaaccggtct 2831  T

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Target: scaffold0084 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 54770 - 54603
Alignment:
Q  52 taccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaa 151  Q
    |||||| ||||||||  ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||  ||||| ||||||  ||||| ||| ||    
T  54770 tacctttgggactgcattgagtcccctatttatagaggtggagggctgcatagccgttgtaatggtacaccttactctgacggttacgaaatcatgggaa 54671  T
Q  152 gtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    |||||||| ||   ||||||||||||||||| || || ||||| |||   ||||||||||||||||||    
T  54670 gtgtaaccacctgtgagtttattgcgggaacgtggagagagacgttgggtttcgtttgaaccagtctc 54603  T

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Target: scaffold0362 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 7522 - 7349
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| |||||||||||| |||  ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||  ||||| | ||||  ||||||    
T  7522 agattctaccttggggattgcattgagtcccctatttatagaggtggagggctgcaaagccgttgtaatggcacaccttactctgac-gttacgaaatcg 7424  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctct 220  Q
    | | ||||||||| |||   ||||||||||||||||| || |  ||||| |||  ||||||||||||||||||||    
T  7423 ttggaagtgtaactgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccagtctct 7349  T

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Target: scaffold0265 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 14898 - 15034
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcg 145  Q
    |||| ||||||||||||||||  ||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||  ||||| ||||||  ||||||    
T  14898 agattctaccttggggactgcattgagtcccctatttataaaggtggatggccgcagagccgttgtaatggcacacctaactctgacggttacgaaatcg 14997  T
Q  146 tggaaagtgtaaccgccaaagagtttattgcgggaac 182  Q
    ||| ||||||||| |||   |||||||||||||||||    
T  14998 tgggaagtgtaacagcctgtgagtttattgcgggaac 15034  T

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Target: scaffold0265; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 17113 - 17190
Alignment:
Q  46 agatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacct 123  Q
    |||| ||||||||| ||||||  |||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  17113 agattctaccttggagactgcattgagtcccatatttatagaggtggagggctgcagagctgttgtaatggcacacct 17190  T

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Target: scaffold0096 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 11037 - 10906
Alignment:
Q  54 ccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaaagt 153  Q
    ||||||||||| |  ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||  ||||| ||||||  ||||| ||| ||||    
T  11037 ccttggggactccattgagtccactatttataaaggtggagggctgtagagccgttgtaatggcacacctaactctgacggttacgaaatcatgggaagt 10938  T
Q  154 gtaaccgccaaagagtttattgcgggaacatg 185  Q
    |||||||||   ||||||||||||||||||||    
T  10937 gtaaccgcctgtgagtttattgcgggaacatg 10906  T

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Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 86562 - 86424
Alignment:
Q  19 agagcgtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggca 118  Q
    |||| ||||| ||||||||| ||| |||||| ||| ||| ||||||||  ||||||| |||| ||||||||||||||| |||| || |||||||||||||    
T  86562 agagagtgagagtttagaggaagaaatagattctatcttcgggactgctatgagtcccctatatatagaggtggagggttgcaaagtcgttgtaatggca 86463  T
Q  119 cacctggctctggcggttagcaaatcgtggaaagtgtaa 157  Q
    |||  |||||||||| |||  ||||||||||||||||||    
T  86462 cactaggctctggcgattacgaaatcgtggaaagtgtaa 86424  T

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Target: scaffold0011 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 20452 - 20342
Alignment:
Q  51 ctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttagcaaatcgtggaa 150  Q
    |||||||||||||||    |||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||| ||  |||||||  |||| |||| |    
T  20452 ctaccttggggactgttaagagtcccctatttttagaggtggagggctgcagagccgttgtaatggtacacttgggtcaagcggttacaaaattgtggga 20353  T
Q  151 agtgtaaccgc 161  Q
    |||||||||||    
T  20352 agtgtaaccgc 20342  T

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Target: scaffold0063 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 36972 - 36830
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcacacctg 124  Q
    ||||||||||||||||||| ||||| ||||||| | |||||    |||||| |||| |||||||||||  ||||| ||||||||||||||||||||| ||    
T  36972 tgagggtttagagggagag-tagattctaccttagagactgttaagagtcccctatatatagaggtgggtggctgtagagccgttgtaatggcacacgtg 36874  T
Q  125 gctctggcggttagcaaatcgtggaaagtgtaaccgccaaagag 168  Q
      || | ||||||  |||| |||| |||||||||| ||||||||    
T  36873 tgtccgacggttacgaaattgtgggaagtgtaacctccaaagag 36830  T

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Target: scaffold0063; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 49419 - 49325
Alignment:
Q  25 tgagggtttagagggagagatagatcctaccttggggactgccgtgagtcctctatttatagaggtggagggctgcagagccgttgtaatggcaca 120  Q
    ||||||||||||||||||| ||||| ||||||| ||||| |    |||||| |||| |||||||||||  || |||||||||||||||||||||||    
T  49419 tgagggtttagagggagag-tagattctaccttagggacagttaagagtcccctatatatagaggtgggtggatgcagagccgttgtaatggcaca 49325  T

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Target: scaffold0483 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 9243 - 9335
Alignment:
Q  128 ctggcggttagcaaatcgtggaaagtgtaa-ccgccaaagagtttattgcgggaacatgtagtgagacattgtagttcgtttgaaccagtctc 219  Q
    ||||||||||  |||| |||| |||||||| |||| | |||||||||||| ||||| || || ||||| |||| |||||||||||||||||||    
T  9243 ctggcggttacgaaattgtgggaagtgtaaaccgctagagagtttattgcaggaacgtgcagagagacgttgtggttcgtttgaaccagtctc 9335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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