View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12863_low_1 (Length: 540)
Name: NF12863_low_1
Description: NF12863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12863_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 523
Target Start/End: Original strand, 10842197 - 10842709
Alignment:
| Q |
13 |
cagataatggaccaagtttggcttatcatatttttcaaaccatgatcatacaaccaataattgaagaaggttggtgtcctatttatgttgtcact--ggc |
110 |
Q |
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| T |
10842197 |
cagataatgggccaagtttggcttatcatatttttcaaaccatgatcatacaaccaataattgaagaagattggtgtcctatttatgttgtcactaaggc |
10842296 |
T |
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| Q |
111 |
aagcctatctatactgacaaagtatatggccattttgtttgggatgtagatcccaatatgtgcgaccaatggtgtgactaatggatgcatgatgatgaaa |
210 |
Q |
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| T |
10842297 |
aagcctatctatactgacaaagtatatggccattttgtttgggatgtagatcccaatatgtgcgaccgatggtgtgactaatggatgcatgatgatgaaa |
10842396 |
T |
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| Q |
211 |
ttgatagagaaattatcctcccttaaaagaagaagaaacgggtgtgtagaccatctcatccaccacagagaaaatttgaccctaataatggtgcatggat |
310 |
Q |
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| T |
10842397 |
ttgatagagaaattatcctcccttaaaagaagaagaaatgggtgtgtagaccatctcatccaccacagagaaaatttgaccctaataatggtgcatggat |
10842496 |
T |
|
| Q |
311 |
aggaatttataagnnnnnnncactgaaccaatcccttgaatcatgttctcagcttcaaattataaccaacatttccctgctctagaaagaaaaatcgacc |
410 |
Q |
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| T |
10842497 |
aggaatttataagaaaaaaacactgaaccaatcccttgaatcatgttctcagcttcaaattgtaaccaacatttccctgctctagaaagaaaaatcgacc |
10842596 |
T |
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| Q |
411 |
ccatcactaacagatcatccaaacctttcatacaaccaaatgaagtttagtctgatggaaaacttaaaccttcaactcaagttgaggaagttctaaattg |
510 |
Q |
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| T |
10842597 |
ccatcactaacagatcatccaaaccttttatacaaccaaatgaagtttagtctgatggaaaacttaatccttcaactcaagttgaggaagttctaaattg |
10842696 |
T |
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| Q |
511 |
gaaatctaaaagt |
523 |
Q |
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| T |
10842697 |
gaaatctaaaagt |
10842709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 511
Target Start/End: Original strand, 12347817 - 12347919
Alignment:
| Q |
408 |
accccatcactaacagatcatccaaacctttcatacaaccaaatgaagtttagtctgatggaaaacttaaaccttcaactcaagttgaggaagttctaaa |
507 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||||||||||| || | ||| ||||||||||||| | ||| |||| ||| || ||| |||| |
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| T |
12347817 |
acccaatcacaaacagatcatccaaaccaatcatacaaccaaatgaagtccagccagat-gaaaacttaaaccgttaacccaagctgaagaggttttaaa |
12347915 |
T |
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| Q |
508 |
ttgg |
511 |
Q |
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|||| |
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| T |
12347916 |
ttgg |
12347919 |
T |
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