View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12863_low_2 (Length: 463)
Name: NF12863_low_2
Description: NF12863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12863_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 27782622 - 27783065
Alignment:
| Q |
1 |
atacgttgataaagagtgtacatgaaataaacatcaaagccatgcaatccactcatatatattaaattgactcctcattgctnnnnnnntccatgaaacc |
100 |
Q |
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| T |
27782622 |
atacgttgataaagagtgtacatgaaataaacatcaaagccatgcaatccactcatatatattaaattgactcctcattgctaaaaaaatccatgaaacc |
27782721 |
T |
|
| Q |
101 |
gcttttccttttcatgttttgaaatgtatttttaagtttccataataaataaaattgaactgttataaggtataaaatgtataataatatcttgatatta |
200 |
Q |
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| T |
27782722 |
gcttttccttttcatgttttgaaatgtattta-aagtttccataataaataaaattgaactgttataaggtataaaatgtataataatatcttgatatta |
27782820 |
T |
|
| Q |
201 |
tcgtagagtatcttatactatttcacaggacgttaccagtgttagagtatcgtttgaaatggagaagtcacttaaatgactcttatcannnnnnncactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27782821 |
tcgtagagtatcttatactatttcacaggacgtttccagtgttagagtatcgtttgaaatggagaagtcacttaaatgactcttatcatttttttcactt |
27782920 |
T |
|
| Q |
301 |
actctgtccactaacttatgtttctcatgattcttagagctgaagttgagaggcttgaagctgttaagacagaattgcataggcaaattgcagaggaggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27782921 |
actctgtccactaacttatgtttctcatgattcttagagctgaagttgagaggcttgaagctgttaagacagaattgcaaaggcaaattgcagaggaggt |
27783020 |
T |
|
| Q |
401 |
taaaccttggttttctcaattttaccttgtctgtgtacaagaatc |
445 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27783021 |
taaaccttggttttctcaattttactttgtctgtgtacaagaatc |
27783065 |
T |
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