View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12864_high_5 (Length: 373)
Name: NF12864_high_5
Description: NF12864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12864_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 42852968 - 42852615
Alignment:
| Q |
12 |
tcatcacatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaa |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42852968 |
tcatgacatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaa |
42852869 |
T |
|
| Q |
112 |
tgcgcctcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaataaatttaaaacgattaaatggttata |
211 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
42852868 |
tgtgtctcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaaaaaaattaaaacgattaaatggttata |
42852769 |
T |
|
| Q |
212 |
tttgttagtttcaagaaaatatcaatctccaaatattacacctattgacaagttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42852768 |
tttgttagtttcaagaaaatatcaatctccaaatattacacctattgacaagttaaacaaacaaatagtaacttacatcctatctcggataagtgtgcgt |
42852669 |
T |
|
| Q |
312 |
gctctaagaaattccgtattaattgctgatccgcctaaagatggcatctgtgct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42852668 |
gctctaagaaattccgtattaattgctgatccgcctaaagatggcatctgtgct |
42852615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 42856497 - 42856378
Alignment:
| Q |
19 |
atatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgcct |
118 |
Q |
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| T |
42856497 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42856398 |
T |
|
| Q |
119 |
caatgtcgtcaagcaagtcg |
138 |
Q |
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|||||| ||||||||||||| |
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| T |
42856397 |
caatgttgtcaagcaagtcg |
42856378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 42860564 - 42860445
Alignment:
| Q |
19 |
atatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgcct |
118 |
Q |
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|||| ||||| ||| |||| ||||||||||||||| |||||||| | ||||||||||| ||||||||||||||| ||| | ||| ||||||||| | || |
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| T |
42860564 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42860465 |
T |
|
| Q |
119 |
caatgtcgtcaagcaagtcg |
138 |
Q |
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|||||| ||||||||||||| |
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| T |
42860464 |
caatgttgtcaagcaagtcg |
42860445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 42848302 - 42848198
Alignment:
| Q |
17 |
acatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgc |
116 |
Q |
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|||||| ||||| ||| |||| |||||||||||||||||||||||| | |||||| ||| ||||||||||||||| ||| | ||| ||||||||| || |
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| T |
42848302 |
acatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaatgtgc |
42848203 |
T |
|
| Q |
117 |
ctcaa |
121 |
Q |
| |
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||||| |
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| T |
42848202 |
ctcaa |
42848198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 42854858 - 42854664
Alignment:
| Q |
17 |
acatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgc |
116 |
Q |
| |
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|||||| ||||| ||| |||| |||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||| ||| | ||| ||||| | | |
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| T |
42854858 |
acatatatactgcagtgatcctaatcaataactttgatagaatggcctcacaagttctaagttaagcaatatctatatagcggaagatgcagaaacggac |
42854759 |
T |
|
| Q |
117 |
ctcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaataaatttaaaacgattaaatggttatat |
212 |
Q |
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|||||||| |||||||||||| |||| | | | || |||||||||| | | ||||||||| ||| ||||||||| ||| ||||||||||||| |
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| T |
42854758 |
ctcaatgttgtcaagcaagtcacaaataccactgcaatgaacactacat-tttttacaatctgaataaaaaatttaaaccgaataaatggttatat |
42854664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 42854103 - 42854041
Alignment:
| Q |
263 |
gttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattc |
325 |
Q |
| |
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||||||||||||||| |||||||||||||| ||| | |||| || |||||||||||||||||| |
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| T |
42854103 |
gttaaacaaacaaatggtaacttacatcctctcttgaataaatgagcgtgctctaagaaattc |
42854041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 42860383 - 42860281
Alignment:
| Q |
263 |
gttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaat------tccgtattaattgctgatccgcctaaagatggc |
356 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| | |||| || | |||||||||||||| ||| | ||||| | ||||||||||||||||||| |
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| T |
42860383 |
gttaaacaaacaaatagcaacttacatcctctcttgaataaatgagtgtgctctaagaaattcttggtccatgttaatcgttgatccgcctaaagatggc |
42860284 |
T |
|
| Q |
357 |
atc |
359 |
Q |
| |
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||| |
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|
| T |
42860283 |
atc |
42860281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 42848050 - 42848006
Alignment:
| Q |
215 |
gttagtttcaagaaaatatcaatctccaaatattacacctattga |
259 |
Q |
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||||||||||||||||||| ||| | ||| ||||||||||||||| |
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| T |
42848050 |
gttagtttcaagaaaatatgaattttcaagtattacacctattga |
42848006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 21765157 - 21765105
Alignment:
| Q |
273 |
caaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattc |
325 |
Q |
| |
|
||||||||||||||||||| |||||| | || ||||||||| ||||||||||| |
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|
| T |
21765157 |
caaatagtaacttacatcccatctcgtacaactgcgcgtgccctaagaaattc |
21765105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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