View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12864_high_7 (Length: 324)
Name: NF12864_high_7
Description: NF12864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12864_high_7 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14631 - 14934
Alignment:
| Q |
1 |
ttaagaaaattttatgtcccagtgtcgtggtaagattgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttatt |
100 |
Q |
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| T |
14631 |
ttaagaaaattttatgtcccagtgttgtggtaagattgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttatt |
14730 |
T |
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| Q |
101 |
ttgatattcattgttgattgtttgttttagttatttatagcactattgtagaagaatgtagtcggaagttatgttacttgannnnnnnnnnataagttgt |
200 |
Q |
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| T |
14731 |
ttgatattcattgttgattgtttgttttagttatttatagcactattgtagaagaatgtagtcggaagttatgttacttga-tttttttttataagttgt |
14829 |
T |
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| Q |
201 |
caatgcaattttctagtgtgctgttattatggacactgtctatttccaagtagaacatattttgtcatttgatttttgctaaaactaatggatgtatgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14830 |
caatgcaattttctagtgtgctgttattatggacactgtctatttccaagtagaacatattttgtcatttgatttttgctaaaactaatggatgtatgca |
14929 |
T |
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| Q |
301 |
ttagc |
305 |
Q |
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| T |
14930 |
ttagc |
14934 |
T |
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