View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12864_low_2 (Length: 499)
Name: NF12864_low_2
Description: NF12864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12864_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 2792391 - 2791910
Alignment:
| Q |
11 |
caaaggtggaatcaacaaaataaaaatgataaaccatagagaacactattccctccctaatcataagtttaaccaccaatgacctttttacaccgttagg |
110 |
Q |
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| T |
2792391 |
caaaggtggaatcaacaaaataaaaatgataaaccatagagaacactattccctccctagtcataagtttaaccaccaatgacctttttacccctttagg |
2792292 |
T |
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| Q |
111 |
ttcaaatgaaaaaagagtttgattcaggagaaaaagcacaaaactatacttcgaaactgcactaaatttcccatacacttcttatgactcgttagtattt |
210 |
Q |
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| T |
2792291 |
ttcaaatgaaaaaagagtttgattcaggagaaaaagcacaaaactatacttcgaaactgcactaaatttcccatacacttcttatgactcgttagtattt |
2792192 |
T |
|
| Q |
211 |
gtttaccaaagatgcaaatcagcagaaaaagcacaaaactatagtagtatgtagcataccgatgaagggacaaaatgtgttgcaagaccacaaacaagca |
310 |
Q |
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| T |
2792191 |
gtttaccaaagatgcaaatcagcagaaaaagcacaaaactctagtagtatgtagcataccgatgaagggacaaaatgtgttgcaagaccacaagcaagca |
2792092 |
T |
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| Q |
311 |
ttt---------------------ctgtaagaccaacatattctcctgcaatttgttttccaaaagtaaagaaataagaggagacgaggatgttattgtg |
389 |
Q |
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| T |
2792091 |
tttctgcaccatccaacctagcacctgtaagaccaacatattctcctgcaatttgttttccaaaaggaaagaaaaaagaggagacggggatgttattgtg |
2791992 |
T |
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| Q |
390 |
cttatcttattagccgtttgcaaatgctgaaaatttgtatcacaatcaaaagtattccatggaagtatttgattttgatata |
471 |
Q |
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| T |
2791991 |
cttatcttattagacgtttgcaaatgctgaaaatttgtatcataatcaaaagtattccaaggaggtatttgattttgatata |
2791910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 157 - 475
Target Start/End: Complemental strand, 2782595 - 2782243
Alignment:
| Q |
157 |
tacttcgaaactgcactaaatttcccat------acacttcttatgactcg-------ttagtatttgtttaccaaagatgcaaatcagcagaaaaagca |
243 |
Q |
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| T |
2782595 |
tacttcgaaactgcactaaatttcccatgaatgtacacttcttatgactcgactggagttagtatttgtttaccaaagatgcaaatcagcagaaaaagca |
2782496 |
T |
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| Q |
244 |
caaaactatagtagtatgtagcataccgatgaagggacaaaatgtgttgcaagaccacaaacaagcatttctg---------------------taagac |
322 |
Q |
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| T |
2782495 |
caaaactatagtagtatgtagcataccgatgaagggacaaaatgtgttgcaagaccacaagcaagcatttctgcaccatccaacctagcacctgtaagac |
2782396 |
T |
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| Q |
323 |
caacatattctcctgcaatttgttttccaaaagtaaagaaataagaggagacgaggatgttattgtgcttatcttattagccgtttgcaaatgctgaaaa |
422 |
Q |
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| T |
2782395 |
caacatattctcctgcaatttgttttccaaaaggaaagaaaaaagaggagacggggatgttattgtgcttatcttattagacgtttgcaaatgctgaaaa |
2782296 |
T |
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| Q |
423 |
tttgtatcacaatcaaaagtattccatggaagtatttgattttgatatacata |
475 |
Q |
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| T |
2782295 |
tttgtatcataatcaaaagtattccatggaagtatttgattttgatatacata |
2782243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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