View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12864_low_4 (Length: 395)
Name: NF12864_low_4
Description: NF12864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12864_low_4 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 275862 - 275509
Alignment:
| Q |
20 |
cgtttgtatccaaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275862 |
cgtttgtatccaaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaat |
275763 |
T |
|
| Q |
120 |
gtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275762 |
gtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaa |
275663 |
T |
|
| Q |
220 |
aggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaactt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275662 |
aggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaactt |
275563 |
T |
|
| Q |
320 |
cttaaatcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
387 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275562 |
c--------------ttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
275509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 28752 - 28399
Alignment:
| Q |
20 |
cgtttgtatccaaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28752 |
cgtttgtatccaaaggcctctcaattgttggaggaaggatcattaaccaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaat |
28653 |
T |
|
| Q |
120 |
gtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28652 |
gtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaa |
28553 |
T |
|
| Q |
220 |
aggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaactt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28552 |
aggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaactt |
28453 |
T |
|
| Q |
320 |
cttaaatcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
387 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28452 |
c--------------ttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
28399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 26396467 - 26396113
Alignment:
| Q |
20 |
cgtttgtatccaaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396467 |
cgtttgtatccaaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaat |
26396368 |
T |
|
| Q |
120 |
gtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396367 |
gtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaa |
26396268 |
T |
|
| Q |
220 |
aggggcaccg-aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaact |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396267 |
aggggcaccgaaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattatttt-------- |
26396176 |
T |
|
| Q |
319 |
tcttaaatcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396175 |
------atcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
26396113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 26460346 - 26460430
Alignment:
| Q |
185 |
aagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaa |
269 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| |||||||| ||||||| |
|
|
| T |
26460346 |
aagaaattacttgatcctaaaccagcaaacacaaaaggagctccgaaaagaatcaagagtgggattgagagaggtcgtaagagaa |
26460430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University