View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12864_low_6 (Length: 345)
Name: NF12864_low_6
Description: NF12864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12864_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 6752970 - 6752649
Alignment:
| Q |
7 |
agaagaacaagtaaaggtttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagat |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6752970 |
agaacaacaagtaaaggtttatatcttttaataaggactcgggttcgtctcttaccctccttattaacggcaccccttata-ttccaactaagaatagat |
6752872 |
T |
|
| Q |
107 |
aaatcattaaaactagtcataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcacta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6752871 |
aaatcattaaaactagtcataagtaccttagtgaaataaaggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttgacatttgcacta |
6752772 |
T |
|
| Q |
207 |
gccttggaaccatcattatttatgtggacaccacttgtattattaatttcatgcttattacacatgttggatcctttgcttatttcttccgtagccatta |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752771 |
gccttggaaccatccttatttatgtggacaccacttgtattattaatttcatgcttattacacatgttggatcctttgcttatttcttccgtagccatta |
6752672 |
T |
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| Q |
307 |
catgtgtatcttgctccaatatt |
329 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
6752671 |
catgtgtatcttggtccaatatt |
6752649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 1811564 - 1811761
Alignment:
| Q |
7 |
agaagaacaagtaaaggtttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagat |
106 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1811564 |
agaacaacaagtaaaggtttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttata-ttccaactaagaatagat |
1811662 |
T |
|
| Q |
107 |
aaatcattaaaactagtcataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1811663 |
aaatcattaaaactagtcataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggaattaacatttgcact |
1811761 |
T |
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