View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12864_low_8 (Length: 246)
Name: NF12864_low_8
Description: NF12864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12864_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 40585195 - 40585427
Alignment:
| Q |
4 |
aaaataaaaatttgaggatgcaaaattatcattaataatatgacattggtgaccattatttaaacttcgtctcttaaagttacaaaatcaaattcttact |
103 |
Q |
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| T |
40585195 |
aaaataaaaatttgaggatgcaaaattatcattaataatatgacatcggtgaccattatttaaacttcgtctcttaaagttacaaaatcaaattcttact |
40585294 |
T |
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| Q |
104 |
actgaactgacatctcaagaacaaatgcatcgacactaatgatatttttatatctctagattacaaattctgagtaccattgacatatttcacttgtaca |
203 |
Q |
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| T |
40585295 |
actgaactgacatcttaagaacaaatacagtgacactaatgatatttttatatctctagattacaaattctgagtaccattgacatatttcacttgtaca |
40585394 |
T |
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| Q |
204 |
acaaaactatatac-ttttttatcaacagtgaa |
235 |
Q |
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| T |
40585395 |
gcaaaactatatactttttttatcaacagtgaa |
40585427 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 5399921 - 5399871
Alignment:
| Q |
60 |
tatttaaacttcgtctcttaaagttacaaaatcaaattcttactactgaac |
110 |
Q |
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| T |
5399921 |
tattcaaacttcgtctcttaaggttacaaagtcaaactcttaccactgaac |
5399871 |
T |
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