View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_1 (Length: 646)
Name: NF12865_high_1
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 25275890 - 25276422
Alignment:
| Q |
18 |
attatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaattgcgtctgaaacattttgcaatgcaaagcta |
117 |
Q |
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| T |
25275890 |
attatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaattgcgtctgaaacattttgcaatgcaaagcta |
25275989 |
T |
|
| Q |
118 |
aaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgcaactgttgccgtaatttcagagttaaccatgacttctaaaaagcgagcga |
217 |
Q |
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| T |
25275990 |
aaagtattggcagtaacatcatgagtaggcgcatcagaatgttaagctgcaactgttgccgtaatttcagagttaaccatgacttgtaaaaagcgagcga |
25276089 |
T |
|
| Q |
218 |
ggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccactcataatcaacctcgacaggaaaagcaaaaccttccctttccaccatg |
317 |
Q |
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| T |
25276090 |
ggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccactcataatcaacc----------------aaccttccctttccaccatg |
25276173 |
T |
|
| Q |
318 |
aattcgtagatgagacgccttgaaatatcaatatccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggag |
417 |
Q |
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| T |
25276174 |
acttcgtagatgagacgccttgaaatatcaatatccaccagcacctgcgtgtaatggccaaatgtgcgtttctgagtttcggcgtcaataataagccggg |
25276273 |
T |
|
| Q |
418 |
tgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcatatcaaaggtttttccaatatcccacacctcacgtgtcaatgtttgacaggt |
517 |
Q |
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| T |
25276274 |
tgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcatatcaaaggtttttccaatatcccacacctcacgtgtcagtgtttgacaggt |
25276373 |
T |
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| Q |
518 |
atatttaaattactagaaatgttaatgtatcggtatcttaagttcaaca |
566 |
Q |
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| T |
25276374 |
atatttaaattactagaaatgttaatgtatcagtatcttatgttcaaca |
25276422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 28 - 243
Target Start/End: Original strand, 5570286 - 5570497
Alignment:
| Q |
28 |
actacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaattgcgtctgaaacattttgcaatgcaaagctaaaagtattgg |
127 |
Q |
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| T |
5570286 |
actacagtagataattccaacacgggagaggcaggttgaggcaacaaaccctgttgaattgcgtccgaaatattttgca-----aagctaaaagtattgg |
5570380 |
T |
|
| Q |
128 |
cagtaacatcatgagtcggcgcatcagaatgttaagctgcaactgttgccgtaatttcagagttaacca-tgacttctaaaaagcgagcgaggaatcaat |
226 |
Q |
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|| ||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||| |||||||| |||||| || | |
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| T |
5570381 |
caataacatcatgagtaggcgcatcagaatgtgaagttgcgactgttgccgtaatttcagagttaaccattgacttctcaaaagcgaatgaggaaccatt |
5570480 |
T |
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| Q |
227 |
accaaggggatttttgc |
243 |
Q |
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| T |
5570481 |
gccaaggggatttttgc |
5570497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 577 - 634
Target Start/End: Original strand, 25276531 - 25276588
Alignment:
| Q |
577 |
cattacatggatatgtgacgcacttatctgtttttctctatatgggtatttgtgatgt |
634 |
Q |
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| T |
25276531 |
cattacatggatatgtgacacacttaactgtttttctctataagggtatttgtgatgt |
25276588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 17705253 - 17705181
Alignment:
| Q |
351 |
tccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaa |
423 |
Q |
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| T |
17705253 |
tccaccagcacccgcgcataatggccaaaggtgcgtttctgagttgcggcatcaatgatgagaggagtaccaa |
17705181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 23869337 - 23869413
Alignment:
| Q |
348 |
atatccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaat |
424 |
Q |
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| T |
23869337 |
atatccaccagcacccgcacataatggccaaaggtgcgtttctgagttgcgatatcaatgatgagaggagtgccaat |
23869413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 17111357 - 17111295
Alignment:
| Q |
348 |
atatccaccagcacctgtgcgtaatggccaaat-gtgcgtttctgagttgcggcgtcaataat |
409 |
Q |
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||||||||||||||| | |||||||| ||||| || ||||| |||||||||||||||||||| |
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| T |
17111357 |
atatccaccagcacccgcgcgtaatgaccaaaaagtacgtttttgagttgcggcgtcaataat |
17111295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 32136215 - 32136282
Alignment:
| Q |
246 |
tgtgaacagaaatccgggagccactcataatcaacctcgacaggaaaagcaaaaccttccctttccac |
313 |
Q |
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| T |
32136215 |
tgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccac |
32136282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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