View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_11 (Length: 351)
Name: NF12865_high_11
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 41574064 - 41574332
Alignment:
| Q |
24 |
gggtccacttggttgccctctactggggtggcatatgtagctggcttatccacttgaagtctattctgctgctgcatgcaagtatagatagatgatacat |
123 |
Q |
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| T |
41574064 |
gggtccacttggttgccctctactggggtggcatatgtagctggcttatccacttgaagtctattctgctgctgcatgcaagtatagatagatgatacat |
41574163 |
T |
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| Q |
124 |
ttcaatctttagtcttatttcattgttcaaaagcactaatttgatttgattttgcccgtataattttatagtacatactttatttggtaattgtaccaaa |
223 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41574164 |
ttca------------------ttgttcaaaagcactaatttgatttgattt-gcccgtataattttatagtacatactttatttggtaattgtaccaaa |
41574244 |
T |
|
| Q |
224 |
aactacatatatagttttcgtcgggcacaatgcttattttttccagtgataataatgagaaaatataagttgtaaacggtgtttcata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41574245 |
aactacatatatagttttcgtcgggcacaatgcttattttttccagtgataataatgagaaaatataagttgtaaacgttgtttcata |
41574332 |
T |
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