View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_18 (Length: 294)
Name: NF12865_high_18
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 46797840 - 46797569
Alignment:
| Q |
18 |
tgaagtttgtattaccaatttgtactataatttcagccttttcagaaaaatgaaaatgcaattttttctgactgagttggtatatttgcggttgagtttt |
117 |
Q |
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| T |
46797840 |
tgaagtttgtattaccaatttgtactataatttcagccttttcagaaaaatgaaaatgcaattttttctgactgagttggtatatttgcggttgagtttt |
46797741 |
T |
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| Q |
118 |
atacagaggagacaggtaagcagctattacagcctctcacctaccttttacactctttgtacggtttcaaacttcattttctttcggataaaaaccttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46797740 |
atacagaggagacaggtaagcagctattacagcctctcacctaccttttacactctttgtacggtttcaaacttcattttctttcggataaaaaccctca |
46797641 |
T |
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| Q |
218 |
tagctagatccataaggatagggttttcaactttttcaggtgtatataactactacaatttcctttgctact |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46797640 |
tagctagatccataaggatagggttttcaactttttcaggtgtatataactactacaatttcctttgttact |
46797569 |
T |
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