View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_29 (Length: 227)
Name: NF12865_high_29
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23032209 - 23032435
Alignment:
| Q |
1 |
gatccaaaacatttttactgtatgcaaatacaacaacttattcgaatatcgttttacaaaataaattgttcatcatcgcacaagatgcaaaatattgggt |
100 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23032209 |
gatccaaaatatttttactgtatgaaaatacaacaacttattcgaatatcgttttacaaaataaattgttcatcatcgcacaagatgcaaaatattgggt |
23032308 |
T |
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| Q |
101 |
gaatattatacttgtaatgacgcgcaatgttaactccttaagcctgtaaaaaggaaacataaactcgcttttgatttatagaaacttacaagccatacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23032309 |
gaatattatacttgtaatgacgcgcaatgttaactcctcaagcctgtaaaaaggaaacataaactcgctttcgatttatagaaacttacaagccatacta |
23032408 |
T |
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| Q |
201 |
tgttgatttccatggccaacagggttt |
227 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
23032409 |
tgttgatttccatggtcaacagggttt |
23032435 |
T |
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