View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_34 (Length: 212)
Name: NF12865_high_34
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 2017191 - 2017324
Alignment:
| Q |
15 |
agcacagaactcaactttcctaaaaacgtcgccggag----------ttgatcatcggccgccaagaactctccatccaggttattctctatcatttttt |
104 |
Q |
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| T |
2017191 |
agcacagaactcaacttccctgaaaacgtcgccggagcacgacgtagttgatcatcggacgccaagaactctccatccaggttattgtctatcatttttt |
2017290 |
T |
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| Q |
105 |
cggattcaattccaccgcaaattgcggccacaat |
138 |
Q |
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| T |
2017291 |
cggattcaattccaccgcaaattgcgggcacaat |
2017324 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 2017625 - 2017685
Alignment:
| Q |
133 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatctcgtcgaggcagatc |
193 |
Q |
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| T |
2017625 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatcgcgtcgcggcagatc |
2017685 |
T |
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