View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_35 (Length: 202)
Name: NF12865_high_35
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 7659658 - 7659825
Alignment:
| Q |
22 |
gcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatc |
121 |
Q |
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| T |
7659658 |
gcttctggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatc |
7659757 |
T |
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| Q |
122 |
aagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
189 |
Q |
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| T |
7659758 |
aagaccttgtgtttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcctcagttcatctc |
7659825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 7624027 - 7623860
Alignment:
| Q |
22 |
gcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatc |
121 |
Q |
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| T |
7624027 |
gcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatc |
7623928 |
T |
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| Q |
122 |
aagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
189 |
Q |
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| T |
7623927 |
aagatcttgtgtttgccccttatggtccgaggtggcgaatgctccgaaaaatctcctccgttcatctc |
7623860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 7675293 - 7675437
Alignment:
| Q |
30 |
ctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatctt |
129 |
Q |
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| T |
7675293 |
ctccgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggccacccaatgccggagctaagtacataggttataattatcaagacctt |
7675392 |
T |
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| Q |
130 |
gtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatc |
174 |
Q |
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| T |
7675393 |
gtgtttggtccttatggtccaaggtggcgactactcagaaaaatc |
7675437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 45477644 - 45477762
Alignment:
| Q |
40 |
gaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcac |
139 |
Q |
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| T |
45477644 |
gaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataattatcaagatcttgtttttgctc |
45477743 |
T |
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| Q |
140 |
cttatggtccacggtggcg |
158 |
Q |
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| T |
45477744 |
cttatggaccacggtggcg |
45477762 |
T |
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